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[180156_at] 7TM chemoreceptor, srw family

Description K12D9.9 /REP_DB=WormBase Gene ID /WP=CE12196 /TR=P91384 /GB=AAG24166.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 27      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 69
(-2.4)
A 		63
(-3)
A 		102.6
(1)
A 		122.9
(3)
A 		60
B 79
(1.4)
A 		89.5
(3)
A 		50.2
(-3)
P 		60.1
(-1.5)
A 		39
C 68.4
(-1)
P 		107.7
(3)
A 		49.4
(-3)
A 		96.1
(1.8)
A 		58
avr 72.1
(-1.9) 		86.7
(1.5) 		67.4
(-3) 		93
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 102.7
(3)
A 		76.8
(0.8)
A 		32.1
(-3)
A 		52.9
(-1.2)
A 		47.2
(-1.7)
A 		60.7
(-0.6)
A 		71
B 115.9
(3)
A 		54
(-3)
A 		82.5
(-0.2)
A 		82.2
(-0.3)
A 		55.1
(-2.9)
A 		74
(-1.1)
A 		62
C 66.2
(1.2)
P 		60.7
(0.7)
A 		87.9
(3)
A 		15.7
(-3)
A 		62.8
(0.9)
A 		37
(-1.2)
A 		72
avr 94.9
(3) 		63.8
(-1.2) 		67.5
(-0.7) 		50.3
(-3) 		55
(-2.4) 		57.2
(-2.1) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 25.1
(2.2)
A 		13.7
(-3)
A 		26.8
(3)
A 		18
(-1)
A 		13
B 25.2
(3)
A 		22.1
(1.6)
A 		11.6
(-3)
P 		12.8
(-2.5)
A 		14
C 22.6
(-0.4)
P 		31
(3)
A 		17.2
(-2.6)
A 		16.2
(-3)
A 		15
avr 24.3
(3) 		22.3
(1.6) 		18.5
(-1) 		15.7
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 18.9
(0.5)
A 		27.3
(3)
A 		7
(-3)
A 		13.4
(-1.1)
A 		14.2
(-0.9)
A 		14.8
(-0.7)
A 		20
B 40.3
(3)
A 		18
(-3)
A 		20
(-2.5)
A 		21.8
(-2)
A 		22.4
(-1.8)
A 		27.6
(-0.4)
A 		22
C 24.5
(3)
P 		18.5
(1.3)
A 		22.4
(2.4)
A 		3.2
(-3)
A 		20.3
(1.8)
A 		12.4
(-0.4)
A 		21
avr 27.9
(3) 		21.3
(0.4) 		16.5
(-1.5) 		12.8
(-3) 		19
(-0.5) 		18.3
(-0.8) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180156_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15151
Sequence Type Exemplar sequence
Representative Public ID K12D9.9 NCBI
Target Description K12D9.9 /REP_DB=WormBase Gene ID /WP=CE12196 /TR=P91384 /GB=AAG24166.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071419(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071419 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-112) (srw-112) mRNA, complete cds. 11/11 None
K12D9.9 ENSEMBL cdna:known chromosome:CEL140:V:3003968:3005891:-1 gene:K12D9.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022479 8/11 Cross Hyb Matching Probes None
GENEFINDER00000022490 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3004010-3005891(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-112
Ensembl K12D9.9
Entrez Gene 187330 Entrez gene
SwissProt P91384 EMBL-EBI
WormBase CE34346 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24166 Serpentine receptor, class w protein 112 [Caenorhabditis elegans] ref|NP_503820.2| Serpentine Receptor, class W family member (srw-112) [Caenorhabditis elegans] 0.0
blast CAE74184 Hypothetical protein CBG21857 [Caenorhabditis briggsae] 4.0E-76
blast AAC69063 Serpentine receptor, class w protein 133 [Caenorhabditis elegans] ref|NP_504144.2| Serpentine Receptor, class W family member (srw-133) [Caenorhabditis elegans] 8.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503820.2 6 41-58,68-89,160-177,227-249,276-298,318-340
K12D9.9 6 41-58,68-89,160-177,227-249,276-298,318-340
Sequence
Target Sequence 
>C. ELEGANS:180156_AT
ttacaatttgctctctttgcttacctaccacagtattacaatactttaaagcgggattca
ttgagaacgaggaggccaacgcgtgtaaaggcaatgaaatggttgacgaatattattatc
gggggttgtcagacttgtttatggacaacgaaatgttgatatataatatatttttctatc
tcgaaggagtcacttcaaaactgattccatgcctactttatccgattgcaactgtgttct
taattatcgaaatccgaaaagctgccataaaccgaaaaaagatatcgtcctcatcatcct
cacaacaagactcatctggaagaactacaaagttgattttctatttgaccgtaatttttt
acattggggaattccccatggcggttttctacattttaaatccaattttacaaatgagca
ttcagtgggggttctatacttaccttgtgtatttcgaatttttgttctctactttattaa
ccgctacaactgcaatacatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACAATTTGCTCTCTTTGCTTACC 554 683 506 Antisense
TTTGCTTACCTACCACAGTATTACA 431 667 521 Antisense
GAGAACGAGGAGGCCAACGCGTGTA 597 391 568 Antisense
ATTATCGGGGGTTGTCAGACTTGTT 650 1 620 Antisense
AAAACTGATTCCATGCCTACTTTAT 694 129 702 Antisense
TTTATCCGATTGCAACTGTGTTCTT 196 675 722 Antisense
AAAAGATATCGTCCTCATCATCCTC 44 133 782 Antisense
CATCATCCTCACAACAAGACTCATC 521 213 797 Antisense
TGGGGGTTCTATACTTACCTTGTGT 639 551 931 Antisense
TGTTCTCTACTTTATTAACCGCTAC 68 563 968 Antisense
TAACCGCTACAACTGCAATACATAT 583 635 983 Antisense
Sequence Source Affymetrix Proprietary Database