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[180155_at]

Description C32B5.6 /REP_DB=WormBase Gene ID /WP=CE08514 /TR=P91113 /GB=AAB37962.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 24      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 14.8
(-3)
A 		25.4
(1.2)
A 		29.9
(3)
A 		29.5
(2.8)
A 		15
B 15.6
(0.1)
A 		7
(-3)
A 		23.9
(3)
A 		22.7
(2.6)
A 		17
C 3.6
(-3)
A 		9.4
(-1.6)
A 		16.9
(0.2)
A 		28.6
(3)
A 		25
avr 11.3
(-3) 		13.9
(-2) 		23.6
(1.7) 		26.9
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 6.2
(-2)
A 		6.1
(-2)
A 		11.8
(-0)
A 		3.4
(-3)
A 		20.3
(3)
A 		9.2
(-0.9)
A 		17
B 6.4
(-3)
A 		15.6
(1.1)
A 		12.6
(-0.2)
A 		6.9
(-2.8)
A 		19.8
(3)
A 		17
(1.7)
A 		13
C 6.9
(-3)
A 		16.5
(3)
A 		9.2
(-1.6)
A 		7.8
(-2.4)
A 		11.2
(-0.3)
A 		14.4
(1.7)
A 		10
avr 6.5
(-2.7) 		12.7
(0.6) 		11.2
(-0.2) 		6
(-3) 		17.1
(3) 		13.5
(1.1) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 5.4
(-1.1)
A 		5.5
(-0.9)
A 		7.8
(3)
A 		4.3
(-3)
A 		4
B 5
(2.2)
A 		1.7
(-3)
A 		5.5
(3)
A 		4.8
(1.9)
A 		4
C 1.2
(-3)
A 		2.7
(-1.1)
A 		5.9
(3)
A 		4.8
(1.6)
A 		5
avr 3.9
(-1.8) 		3.3
(-3) 		6.4
(3) 		4.6
(-0.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.2
(-2.7)
A 		2.2
(-1.5)
A 		2.6
(-1)
A 		0.9
(-3)
A 		6.1
(3)
A 		2.2
(-1.5)
A 		5
B 2.2
(-2.6)
A 		5.2
(0.2)
A 		3
(-1.9)
A 		1.8
(-3)
A 		8.1
(3)
A 		6.3
(1.3)
A 		6
C 2.6
(-1.2)
A 		5
(3)
A 		2.3
(-1.8)
A 		1.6
(-3)
A 		3.6
(0.5)
A 		4.8
(2.6)
A 		3
avr 2
(-2.2) 		4.1
(0.6) 		2.6
(-1.4) 		1.4
(-3) 		5.9
(3) 		4.4
(1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180155_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5883
Sequence Type Exemplar sequence
Representative Public ID C32B5.6 NCBI
Target Description C32B5.6 /REP_DB=WormBase Gene ID /WP=CE08514 /TR=P91113 /GB=AAB37962.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061468(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061468 NCBI Caenorhabditis elegans C32B5.6 (C32B5.6) mRNA, complete cds. 11/11 None
SNAP00000042175 ENSEMBL cdna:SNAP chromosome:CEL140:II:960542:970525:1 9/11 None
GENEFINDER00000042188 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:968886:970525:1 11/11 None
C32B5.6 ENSEMBL cdna:known chromosome:CEL140:II:968412:970525:1 gene:C32B5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:968410-970524(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32B5.6
Entrez Gene 183110 Entrez gene
SwissProt P91113 EMBL-EBI
WormBase CE08514 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493867 C32B5.7 [Caenorhabditis elegans] gb|AAB37963.1| Hypothetical protein C32B5.7 [Caenorhabditis elegans] 1.0E-123
blast NP_493869 C32B5.6 [Caenorhabditis elegans] gb|AAB37962.1| Hypothetical protein C32B5.6 [Caenorhabditis elegans] 6.0E-92
blast NP_493869 C32B5.6 [Caenorhabditis elegans] gb|AAB37962.1| Hypothetical protein C32B5.6 [Caenorhabditis elegans] 1.0E-73
blast NP_493869 C32B5.6 [Caenorhabditis elegans] gb|AAB37962.1| Hypothetical protein C32B5.6 [Caenorhabditis elegans] 5.0E-64
blast AAK29985 Hypothetical protein Y71H2AR.2 [Caenorhabditis elegans] ref|NP_497627.1| Y71H2AR.2 [Caenorhabditis elegans] 7.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000042175 1 40-59
Sequence
Target Sequence 
>C. ELEGANS:180155_AT
gactacttcgtcttcaaatcatgatcccggagttgttcctgtataatgagactcaccaag
gcctcaacaatcaaaacgtacatgctgttggagcctatttcgaccaacatgatcccgaag
gactacaacaagttgtcccgcttctcaacgaggctgctgccaaccaagacgttgtggtca
ttgattcaatggcatcgttagtcgacctgtacaccatggactcccgcgggctccacgaaa
tttgcgacttggctacacctttcttccaacttcttgcccatccacgcatttcgatggagg
tcaagttattgattaacagactcaaaggagtattattgactcgtgatgcagcgattcttc
ag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTACTTCGTCTTCAAATCATGAT 403 373 98 Antisense
TCATGATCCCGGAGTTGTTCCTGTA 629 619 116 Antisense
CACCAAGGCCTCAACAATCAAAACG 488 201 151 Antisense
GGAGCCTATTTCGACCAACATGATC 188 523 187 Antisense
ACTACAACAAGTTGTCCCGCTTCTC 417 101 219 Antisense
TCAACGAGGCTGCTGCCAACCAAGA 265 631 242 Antisense
GTTAGTCGACCTGTACACCATGGAC 326 447 294 Antisense
CGCGGGCTCCACGAAATTTGCGACT 286 245 322 Antisense
GAAATTTGCGACTTGGCTACACCTT 251 361 334 Antisense
TTGCCCATCCACGCATTTCGATGGA 465 699 371 Antisense
GACTCGTGATGCAGCGATTCTTCAG 65 375 435 Antisense
Sequence Source Affymetrix Proprietary Database