[Home] | [Total List]

[180153_s_at] 7TM chemoreceptor, srw family

Description K12D9.7 /REP_DB=WormBase Gene ID /WP=CE12192 /TR=P91382 /GB=AAG24164.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 10      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 16.9
(-3)
A 		23.8
(-2.7)
A 		32.6
(-2.2)
A 		139.8
(3)
P 		123
B 49
(-1.4)
A 		81.8
(3)
A 		37.5
(-3)
A 		79.8
(2.7)
P 		44
C 67.4
(0.6)
P 		39.9
(-3)
A 		64
(0.2)
P 		85.2
(3)
P 		45
avr 44.4
(-3) 		48.5
(-2.6) 		44.7
(-3) 		101.6
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 21.4
(-3)
A 		24.9
(-2.5)
A 		59.9
(3)
A 		30.1
(-1.6)
A 		25.1
(-2.4)
A 		56.4
(2.5)
A 		39
B 35.4
(-3)
A 		41.9
(-2.1)
A 		51.6
(-0.8)
A 		80.2
(3)
P 		38.4
(-2.6)
A 		58.4
(0.1)
P 		45
C 15.4
(-2.3)
A 		28.3
(-1.4)
A 		5.9
(-3)
A 		90.5
(2.9)
A 		20.1
(-2)
A 		92.1
(3)
A 		86
avr 24.1
(-3) 		31.7
(-2) 		39.1
(-1) 		66.9
(2.7) 		27.9
(-2.5) 		69
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 6.1
(-2.6)
A 		5.2
(-3)
A 		8.5
(-1.7)
A 		20.5
(3)
P 		15
B 15.6
(0.6)
A 		20.2
(3)
A 		8.7
(-3)
A 		17
(1.3)
P 		12
C 22.3
(3)
P 		11.5
(-3)
A 		22.3
(3)
P 		14.4
(-1.4)
P 		11
avr 14.7
(-0.1) 		12.3
(-3) 		13.2
(-1.9) 		17.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 4
(-3)
A 		8.9
(0)
A 		13
(2.6)
A 		7.6
(-0.8)
A 		7.6
(-0.8)
A 		13.7
(3)
A 		10
B 12.3
(-3)
A 		13.9
(-2)
A 		12.5
(-2.9)
A 		21.2
(2.6)
P 		15.6
(-0.9)
A 		21.8
(3)
P 		10
C 5.7
(-2.1)
A 		8.6
(-1.5)
A 		1.5
(-3)
A 		18.2
(0.4)
A 		6.5
(-2)
A 		30.8
(3)
A 		29
avr 7.3
(-3) 		10.5
(-1.7) 		9
(-2.3) 		15.7
(0.4) 		9.9
(-1.9) 		22.1
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180153_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14923
Sequence Type Exemplar sequence
Representative Public ID K12D9.7 NCBI
Target Description K12D9.7 /REP_DB=WormBase Gene ID /WP=CE12192 /TR=P91382 /GB=AAG24164.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071415(11), NM_071417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071415 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-120) (srw-120) mRNA, complete cds. 11/11 A 
NM_071417 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-119) (srw-119) mRNA, complete cds. 11/11 A 
GENEFINDER00000022490 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2994726:3007950:-1 11/11 None
K12D9.5 ENSEMBL cdna:known chromosome:CEL140:V:2994726:2996032:-1 gene:K12D9.5 11/11 A 
K12D9.7 ENSEMBL cdna:known chromosome:CEL140:V:2998369:2999663:-1 gene:K12D9.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022477 4/11 Cross Hyb Matching Probes None
SNAP00000022478 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2998368-2999663(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
7TM chemoreceptor, srw family
Gene Symbol srw-120
srw-119
Ensembl K12D9.5
K12D9.7
Entrez Gene 187326 Entrez gene
187328 Entrez gene
SwissProt P91380 EMBL-EBI
P91382 EMBL-EBI
WormBase CE34345 Wormbase
CE12192 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24162 Serpentine receptor, class w protein 120 [Caenorhabditis elegans] ref|NP_503816.2| Serpentine Receptor, class W family member (srw-120) [Caenorhabditis elegans] 0.0
blast AAG24164 Serpentine receptor, class w protein 119 [Caenorhabditis elegans] ref|NP_503818.1| Serpentine Receptor, class W family member (srw-119) [Caenorhabditis elegans] 1.0E-177
blast AAG24164 Serpentine receptor, class w protein 119 [Caenorhabditis elegans] ref|NP_503818.1| Serpentine Receptor, class W family member (srw-119) [Caenorhabditis elegans] 1.0E-172
blast T25822 hypothetical protein K12D9.8 - Caenorhabditis elegans 1.0E-169
blast AAG24164 Serpentine receptor, class w protein 119 [Caenorhabditis elegans] ref|NP_503818.1| Serpentine Receptor, class W family member (srw-119) [Caenorhabditis elegans] 1.0E-168
blast AAG24162 Serpentine receptor, class w protein 120 [Caenorhabditis elegans] ref|NP_503816.2| Serpentine Receptor, class W family member (srw-120) [Caenorhabditis elegans] 1.0E-161
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503816.2 5 38-60,161-178,226-248,272-294,309-331
NP_503818.1 5 38-60,161-178,226-248,274-296,311-333
K12D9.5 5 38-60,161-178,226-248,272-294,309-331
K12D9.7 5 38-60,161-178,226-248,274-296,311-333
GENEFINDER00000022490 27 36-58,65-84,89-107,134-156,176-198,271-293,298-320,332-349,364-386,399-421,431-448,472-494,509-531,710-727,775-797,823-845,860-882,922-944,954-976,983-1005,1015-1032,1045-1067,1110-1132,1318-1335,1383-1405,1429-1451,1466-1488
Sequence
Target Sequence 
>C. ELEGANS:180153_S_AT
aagcatctgtcgtcgttattgttggagtttgcgctgcaagcttgcccatttcagttttca
aatatttcgaaaatcagtttgtagagaaagagccgctttatgattgtgctcaaaatggaa
cgtattattatgttactatgtccaaattattcactgcaaatgacggttttttggcaaaat
atttttccttattcaattcatttgtgtcagatataataccgtgtcttctgctcccgattg
taacattattacttattatgaatttgtggaaaaccgctaaaaagagagcaaacattactt
ctgcaactaaccataagaacaataattctacaagcaaaactggattagtattctgtgtaa
ctatcacgtttttcattgttgaatttccatatggattgagtttggggttcttgtggatgt
ttgactatgattcgggcattagtcgcattctgtctttctttggtttcattttctcaatgt
taataaccttgaacacttgcacccatcttttcgtttgcctaatcatatcatctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCATCTGTCGTCGTTATTGTTGG 385 151 488 Antisense
TATTGTTGGAGTTTGCGCTGCAAGC 101 661 504 Antisense
CTGCAAGCTTGCCCATTTCAGTTTT 309 237 521 Antisense
AGCCGCTTTATGATTGTGCTCAAAA 534 83 578 Antisense
CTGCTCCCGATTGTAACATTATTAC 212 237 715 Antisense
AGTATTCTGTGTAACTATCACGTTT 216 63 834 Antisense
GATTGAGTTTGGGGTTCTTGTGGAT 237 435 881 Antisense
GTGGATGTTTGACTATGATTCGGGC 503 489 900 Antisense
ACTATGATTCGGGCATTAGTCGCAT 665 57 911 Antisense
CATCTTTTCGTTTGCCTAATCATAT 455 213 991 Antisense
TCGTTTGCCTAATCATATCATCTCA 383 603 998 Antisense
Sequence Source Affymetrix Proprietary Database