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[180152_at] 7TM chemoreceptor, srw family

Description K12D9.7 /REP_DB=WormBase Gene ID /WP=CE12192 /TR=P91382 /GB=AAG24164.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 02      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 1.9
(-3)
A 		1.7
(-3)
A 		6.9
(-2.3)
A 		46.2
(3)
A 		45
B 2.3
(-2.9)
A 		3.2
(-2.8)
A 		1.9
(-3)
A 		39.3
(3)
P 		37
C 13.6
(-1)
A 		10.2
(-1.5)
A 		0.5
(-3)
A 		40.3
(3)
P 		40
avr 5.9
(-2.6) 		5
(-2.7) 		3.1
(-3) 		41.9
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.6
(-2.6)
A 		2.9
(-2.5)
A 		11.1
(-0.5)
A 		1.4
(-2.9)
A 		25.1
(3)
A 		0.9
(-3)
A 		24
B 22.4
(1.9)
A 		18.5
(1)
A 		27.6
(3)
M 		5.1
(-1.9)
A 		0.6
(-2.9)
A 		0.3
(-3)
A 		27
C 0.6
(-3)
A 		22.9
(3)
A 		8.1
(-1)
A 		10
(-0.5)
A 		9
(-0.7)
A 		4.5
(-2)
A 		22
avr 8.5
(-0.1) 		14.8
(2.6) 		15.6
(3) 		5.5
(-1.4) 		11.6
(1.2) 		1.9
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.7
(-2.7)
A 		0.4
(-3)
A 		1.8
(-1.7)
A 		6.8
(3)
A 		6
B 0.7
(-2.8)
A 		0.8
(-2.7)
A 		0.4
(-3)
A 		8.4
(3)
P 		8
C 4.5
(0.9)
A 		2.9
(-0.5)
A 		0.2
(-3)
A 		6.8
(3)
P 		7
avr 2
(-1.9) 		1.4
(-2.4) 		0.8
(-3) 		7.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.5
(-2.8)
A 		1
(-2.4)
A 		2.4
(-1.2)
A 		0.4
(-2.8)
A 		7.6
(3)
A 		0.2
(-3)
A 		7
B 7.8
(3)
A 		6.2
(1.8)
A 		6.7
(2.1)
M 		1.3
(-2.1)
A 		0.3
(-2.8)
A 		0.1
(-3)
A 		8
C 0.2
(-3)
A 		7
(3)
A 		2.1
(-1.3)
A 		2
(-1.4)
A 		2.9
(-0.6)
A 		1.5
(-1.9)
A 		7
avr 2.8
(0.2) 		4.7
(3) 		3.7
(1.5) 		1.2
(-2.1) 		3.6
(1.4) 		0.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180152_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14923
Sequence Type Exemplar sequence
Representative Public ID K12D9.7 NCBI
Target Description K12D9.7 /REP_DB=WormBase Gene ID /WP=CE12192 /TR=P91382 /GB=AAG24164.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071417 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-119) (srw-119) mRNA, complete cds. 11/11 A 
GENEFINDER00000022490 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2994726:3007950:-1 11/11 None
K12D9.7 ENSEMBL cdna:known chromosome:CEL140:V:2998369:2999663:-1 gene:K12D9.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022478 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2998368-2999663(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-119
Ensembl K12D9.7
Entrez Gene 187328 Entrez gene
SwissProt P91382 EMBL-EBI
WormBase CE12192 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24162 Serpentine receptor, class w protein 120 [Caenorhabditis elegans] ref|NP_503816.2| Serpentine Receptor, class W family member (srw-120) [Caenorhabditis elegans] 0.0
blast AAG24164 Serpentine receptor, class w protein 119 [Caenorhabditis elegans] ref|NP_503818.1| Serpentine Receptor, class W family member (srw-119) [Caenorhabditis elegans] 1.0E-177
blast AAG24164 Serpentine receptor, class w protein 119 [Caenorhabditis elegans] ref|NP_503818.1| Serpentine Receptor, class W family member (srw-119) [Caenorhabditis elegans] 1.0E-172
blast T25822 hypothetical protein K12D9.8 - Caenorhabditis elegans 1.0E-169
blast AAG24162 Serpentine receptor, class w protein 120 [Caenorhabditis elegans] ref|NP_503816.2| Serpentine Receptor, class W family member (srw-120) [Caenorhabditis elegans] 1.0E-161
blast AAN73867 Serpentine receptor, class w protein 117 [Caenorhabditis elegans] ref|NP_503812.1| Serpentine Receptor, class W family member (srw-117) [Caenorhabditis elegans] 1.0E-120
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503818.1 5 38-60,161-178,226-248,274-296,311-333
K12D9.7 5 38-60,161-178,226-248,274-296,311-333
GENEFINDER00000022490 27 36-58,65-84,89-107,134-156,176-198,271-293,298-320,332-349,364-386,399-421,431-448,472-494,509-531,710-727,775-797,823-845,860-882,922-944,954-976,983-1005,1015-1032,1045-1067,1110-1132,1318-1335,1383-1405,1429-1451,1466-1488
Sequence
Target Sequence 
>C. ELEGANS:180152_AT
ggaacgtattattatgttactatgtccaaattattcactgcaaatgacggttttttggca
aaatatttttccttattcaattcatttgtgtcagatataataccgtgtcttctgctcccg
attgtaacattattacttattatgaatttgtggaaaaccgctaaaaagagagcaaacatt
acttctgcaactaaccataagaacaataattctacaagcaaaactggattagtattctgt
gtaactatcacgtttttcattgttgaatttccatatggattgagtttggggttcttgtgg
atgtttgactatgattcgggcattagtcgcattctgtctttctttggtttcattttctca
atgttaataaccttgaacacttgcacccatcttttcgtttgcctaatcatatcatctcaa
taccgaaaatcaacaatccacgccttcacatgtggacttgttaactcgaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACGTATTATTATGTTACTATGT 187 531 604 Antisense
TGTTACTATGTCCAAATTATTCACT 205 561 618 Antisense
TATTCACTGCAAATGACGGTTTTTT 61 663 635 Antisense
GTGTCAGATATAATACCGTGTCTTC 319 487 691 Antisense
AGATATAATACCGTGTCTTCTGCTC 537 65 696 Antisense
GAGAGCAAACATTACTTCTGCAACT 216 395 771 Antisense
TACTTCTGCAACTAACCATAAGAAC 369 645 783 Antisense
AATAATTCTACAAGCAAAACTGGAT 582 163 808 Antisense
CAACAATCCACGCCTTCACATGTGG 408 189 1034 Antisense
CACGCCTTCACATGTGGACTTGTTA 373 199 1042 Antisense
ACATGTGGACTTGTTAACTCGAAAC 221 105 1051 Antisense
Sequence Source Affymetrix Proprietary Database