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[180151_s_at]

Description C09E7.8 /REP_DB=WormBase Gene ID /WP=CE25772 /TR=Q9N5Y6 /GB=AAF60367.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 69.4
(1.4)
A 		22
(-2.2)
A 		10.7
(-3)
A 		91.3
(3)
A 		81
B 27.1
(3)
A 		7.6
(-3)
A 		7.5
(-3)
A 		26.4
(2.8)
A 		20
C 45.6
(-0.2)
A 		37.9
(-2.6)
A 		36.5
(-3)
A 		56
(3)
A 		20
avr 47.4
(1.4) 		22.5
(-2.4) 		18.2
(-3) 		57.9
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 5.8
(-3)
A 		60.6
(-0.1)
A 		111.6
(2.7)
P 		117.6
(3)
P 		100.4
(2.1)
P 		113.7
(2.8)
P 		112
B 54.4
(-0.6)
A 		5
(-3)
A 		61.2
(-0.3)
A 		59.2
(-0.4)
A 		110.3
(2)
P 		130.9
(3)
P 		126
C 52
(-3)
A 		52
(-3)
A 		101.2
(-0)
A 		73.3
(-1.7)
A 		110.5
(0.6)
M 		150.7
(3)
P 		99
avr 37.4
(-3) 		39.2
(-2.9) 		91.3
(0.4) 		83.4
(-0.1) 		107.1
(1.4) 		131.8
(3) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 25.3
(3)
A 		4.8
(-2.5)
A 		2.8
(-3)
A 		13.4
(-0.2)
A 		23
B 8.6
(3)
A 		1.9
(-2.8)
A 		1.7
(-3)
A 		5.6
(0.4)
A 		7
C 15.1
(3)
A 		10.9
(-1.4)
A 		12.7
(0.5)
A 		9.4
(-3)
A 		6
avr 16.3
(3) 		5.9
(-2.9) 		5.7
(-3) 		9.5
(-0.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 1.1
(-3)
A 		21.6
(1.2)
A 		24.3
(1.8)
P 		29.8
(2.9)
P 		30.3
(3)
P 		27.7
(2.5)
P 		29
B 18.9
(-0.8)
A 		1.7
(-3)
A 		14.9
(-1.3)
A 		15.7
(-1.2)
A 		44.8
(2.5)
P 		48.8
(3)
P 		47
C 19.3
(-2.2)
A 		15.9
(-2.8)
A 		25.8
(-1.1)
A 		14.7
(-3)
A 		35.8
(0.5)
M 		50.4
(3)
P 		36
avr 13.1
(-3) 		13.1
(-3) 		21.7
(-1.2) 		20.1
(-1.6) 		37
(1.9) 		42.3
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180151_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6499
Sequence Type Exemplar sequence
Representative Public ID C09E7.8 NCBI
Target Description C09E7.8 /REP_DB=WormBase Gene ID /WP=CE25772 /TR=Q9N5Y6 /GB=AAF60367.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066046(11), NM_181966(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066046 NCBI Caenorhabditis elegans C09E7.8a (C09E7.8) mRNA, complete cds. 11/11 A 
NM_181966 NCBI Caenorhabditis elegans C09E7.8b (C09E7.8) mRNA, complete cds. 11/11 A 
C09E7.8a ENSEMBL cdna:known chromosome:CEL140:III:6553510:6558510:-1 gene:C09E7.8 11/11 A 
C09E7.8b ENSEMBL cdna:known chromosome:CEL140:III:6553635:6558394:-1 gene:C09E7.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6553633-6558509(-) 100.0 100.0
Public Domain and Genome References
Ensembl C09E7.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN63458 Hypothetical protein C09E7.8a [Caenorhabditis elegans] ref|NP_498447.2| C09E7.8a [Caenorhabditis elegans] 0.0
blast AAN63459 Hypothetical protein C09E7.8b [Caenorhabditis elegans] ref|NP_871695.1| C09E7.8b [Caenorhabditis elegans] 0.0
blast AAL00855 Hypothetical protein C09E7.9 [Caenorhabditis elegans] ref|NP_498444.1| C09E7.9 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.4E-10
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.4E-10
Sequence
Target Sequence 
>C. ELEGANS:180151_S_AT
aaaacaaactttgacgtctgccagtttttcatctggaaactcacgtggcacacaaagtta
tggttcttcgatttctacaatgccatcaacttcatctcgcggaaatgttcaacaccactc
tggatctgctgttagaggacaatcaattactcccactggattatctcaagttccaatgag
tccgagaaaactgtttagtcagccaaatatagttacggcttctatcacatcgactgagtt
ggatgatacagaatgtgcaatctgtttggatgagatgaccaactttaaggaaactatcaa
atgtcaatgtagacgtcgtttccatttggaatgtgcaaccaaatggctcaatgagaagag
agaatgcccaacatgccgcaagttgcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACAAACTTTGACGTCTGCCAGT 640 127 2859 Antisense
TTGACGTCTGCCAGTTTTTCATCTG 344 705 2869 Antisense
TTTCATCTGGAAACTCACGTGGCAC 192 673 2885 Antisense
TCTGGAAACTCACGTGGCACACAAA 585 607 2890 Antisense
GGCACACAAAGTTATGGTTCTTCGA 374 535 2905 Antisense
TAGTTACGGCTTCTATCACATCGAC 681 653 3068 Antisense
GCTTCTATCACATCGACTGAGTTGG 673 305 3076 Antisense
ATGTCAATGTAGACGTCGTTTCCAT 89 47 3159 Antisense
AATGTAGACGTCGTTTCCATTTGGA 681 163 3164 Antisense
GAGAAGAGAGAATGCCCAACATGCC 301 391 3211 Antisense
GCCCAACATGCCGCAAGTTGCTTCT 234 283 3224 Antisense
Sequence Source Affymetrix Proprietary Database