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[180148_at]

Description Y49A3A.1 /REP_DB=WormBase Gene ID /WP=CE22209 /TR=Q9XW94 /GB=CAA22073.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 36      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 26.8
(-0.1)
P 		47.9
(2.6)
A 		3.4
(-3)
A 		51.3
(3)
A 		48
B 39.6
(2.3)
A 		44.1
(3)
A 		4
(-3)
A 		17.8
(-0.9)
A 		40
C 10.6
(-2.6)
A 		46.1
(3)
A 		16.1
(-1.7)
M 		8.1
(-3)
A 		38
avr 25.7
(-0.2) 		46
(3) 		7.8
(-3) 		25.7
(-0.2) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 60.4
(3)
A 		35.1
(-0.5)
A 		16.9
(-3)
A 		56.7
(2.5)
A 		23.6
(-2.1)
A 		55.8
(2.4)
M 		44
B 18.6
(-2.2)
A 		27.1
(-1.4)
A 		61.5
(2)
A 		10.7
(-3)
A 		39.7
(-0.2)
A 		72.1
(3)
P 		61
C 47.6
(0.9)
A 		37.7
(-0.1)
A 		7.3
(-3)
A 		7.3
(-3)
A 		28.8
(-0.9)
A 		69.4
(3)
P 		62
avr 42.2
(-0.5) 		33.3
(-1.8) 		28.6
(-2.5) 		24.9
(-3) 		30.7
(-2.1) 		65.8
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.8
(2.6)
P 		10.4
(3)
A 		0.9
(-3)
A 		7.5
(1.2)
A 		10
B 12.6
(3)
A 		10.9
(2.1)
A 		0.9
(-3)
A 		3.8
(-1.5)
A 		12
C 3.5
(-1.9)
A 		13.3
(3)
A 		5.6
(-0.9)
M 		1.4
(-3)
A 		12
avr 8.6
(1.1) 		11.5
(3) 		2.5
(-3) 		4.2
(-1.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 11.1
(1.1)
A 		12.5
(1.9)
A 		3.7
(-3)
A 		14.4
(3)
A 		7.1
(-1.1)
A 		13.6
(2.6)
M 		11
B 6.5
(-2.1)
A 		9
(-1.5)
A 		14.9
(0)
A 		2.8
(-3)
A 		16.1
(0.3)
A 		26.9
(3)
P 		24
C 17.7
(1.5)
A 		11.5
(-0.2)
A 		1.9
(-2.9)
A 		1.5
(-3)
A 		9.3
(-0.8)
A 		23.2
(3)
P 		22
avr 11.8
(-0.8) 		11
(-1.1) 		6.8
(-2.8) 		6.2
(-3) 		10.8
(-1.2) 		21.2
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180148_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14600
Sequence Type Exemplar sequence
Representative Public ID Y49A3A.1 NCBI
Target Description Y49A3A.1 /REP_DB=WormBase Gene ID /WP=CE22209 /TR=Q9XW94 /GB=CAA22073.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074157(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074157 NCBI Caenorhabditis elegans Y49A3A.1 (Y49A3A.1) mRNA, complete cds. 11/11 None
SNAP00000021938 ENSEMBL cdna:SNAP chromosome:CEL140:V:14350871:14353032:1 11/11 None
GENEFINDER00000021945 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14351455:14353481:1 11/11 None
Y49A3A.1 ENSEMBL cdna:known chromosome:CEL140:V:14351455:14354049:1 gene:Y49A3A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14351454-14353481(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49A3A.1
Entrez Gene 179935 Entrez gene
SwissProt Q9XW94 EMBL-EBI
WormBase CE22209 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256134_AT aminoalcoholphosphotransferase (AAPT1) at
CANINE_2:CFA.20928.1.S1_S_AT similar to choline/ethanolaminephosphotransferase cfa
CANINE_2:CFAAFFX.30235.1.S1_S_AT similar to choline/ethanolaminephosphotransferase cfa
DROSOPHILA_2:1641000_A_AT dm
DROSGENOME1:141694_AT dm
CHICKEN:GGAAFFX.12256.1.S1_S_AT choline/ethanolamine phosphotransferase 1 gga
HG-U133_PLUS_2:219375_AT choline/ethanolamine phosphotransferase 1 hs
HG-U133A:219375_AT choline/ethanolamine phosphotransferase 1 hs
HG-FOCUS:219375_AT choline/ethanolamine phosphotransferase 1 hs
HG-U133A_2:219375_AT choline/ethanolamine phosphotransferase 1 hs
HU35KSUBC:RC_N32019_AT choline/ethanolamine phosphotransferase 1 hs
U133_X3P:G5174414_3P_AT choline/ethanolamine phosphotransferase 1 hs
U133_X3P:HS2.125779.1.A1_3P_AT choline/ethanolamine phosphotransferase 1 hs
HG-U133_PLUS_2:1561884_AT choline/ethanolamine phosphotransferase 1 hs
HG-U95B:57801_AT choline/ethanolamine phosphotransferase 1 hs
HG-U95E:73931_AT choline/ethanolamine phosphotransferase 1 hs
HG-U95E:84454_AT choline/ethanolamine phosphotransferase 1 hs
HG-U95D:90269_AT choline/ethanolamine phosphotransferase 1 hs
HG-U133_PLUS_2:1558957_S_AT Choline/ethanolamine phosphotransferase 1 hs
HG-U133_PLUS_2:236327_AT Choline/ethanolamine phosphotransferase 1 hs
HG-U133B:236327_AT Choline/ethanolamine phosphotransferase 1 hs
HG-U133_PLUS_2:239797_AT Choline/ethanolamine phosphotransferase 1 hs
HG-U133B:239797_AT Choline/ethanolamine phosphotransferase 1 hs
HG-U95B:53436_R_AT Choline/ethanolamine phosphotransferase 1 hs
HG-U95B:57799_AT Choline/ethanolamine phosphotransferase 1 hs
HG-U95B:59459_F_AT Choline/ethanolamine phosphotransferase 1 hs
HG-U95B:59463_R_AT Choline/ethanolamine phosphotransferase 1 hs
HG-U95E:83492_AT Choline/ethanolamine phosphotransferase 1 hs
HU35KSUBB:RC_N27563_AT Choline/ethanolamine phosphotransferase 1 hs
HU35KSUBB:RC_T92541_AT Choline/ethanolamine phosphotransferase 1 hs
HU35KSUBC:RC_H81933_AT Choline/ethanolamine phosphotransferase 1 hs
HU35KSUBD:RC_AA424803_AT Choline/ethanolamine phosphotransferase 1 hs
HU35KSUBD:RC_N95028_AT Choline/ethanolamine phosphotransferase 1 hs
U133_X3P:HS.154334.0.A1_3P_AT Choline/ethanolamine phosphotransferase 1 hs
U133_X3P:HS.35669.0.A1_3P_AT Choline/ethanolamine phosphotransferase 1 hs
U133_X3P:HS2.376275.1.A1_3P_S_AT Choline/ethanolamine phosphotransferase 1 hs
MG-U74BV2:114717_AT choline/ethanolaminephosphotransferase 1 mm
MG-U74BV2:106025_AT choline/ethanolaminephosphotransferase 1 mm
MOE430A:1416471_AT choline/ethanolaminephosphotransferase 1 mm
MOUSE430A_2:1416471_AT choline/ethanolaminephosphotransferase 1 mm
MOUSE430_2:1416471_AT choline/ethanolaminephosphotransferase 1 mm
MG-U74BV2:113062_AT choline/ethanolaminephosphotransferase 1 mm
MU19KSUBC:TC37702_AT choline/ethanolaminephosphotransferase 1 mm
RG-U34A:RC_AA892325_AT similar to RIKEN cDNA 9930118K05 rn
RAE230A:1388977_AT similar to RIKEN cDNA 9930118K05 rn
RAT230_2:1388977_AT similar to RIKEN cDNA 9930118K05 rn
RG-U34C:RC_AI176889_AT Similar to RIKEN cDNA 9930118K05 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8654 phospholipid biosynthesis inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22073 Hypothetical protein Y49A3A.1 [Caenorhabditis elegans] ref|NP_506558.1| Y49A3A.1 [Caenorhabditis elegans] 0.0
blast CAE60916 Hypothetical protein CBG04633 [Caenorhabditis briggsae] 0.0
blast CAE57217 Hypothetical protein CBG00076 [Caenorhabditis briggsae] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR000462 EMBL-EBI CDP-alcohol phosphatidyltransferase 2.8E-28
Pfam IPR000462 EMBL-EBI CDP-alcohol phosphatidyltransferase 2.8E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506558.1 8 93-115,130-149,193-215,235-257,264-286,296-318,330-352,387-406
Y49A3A.1 8 93-115,130-149,193-215,235-257,264-286,296-318,330-352,387-406
SNAP00000021938 8 120-142,157-176,220-242,262-284,291-313,323-345,357-379,414-433
GENEFINDER00000021945 8 93-115,130-149,193-215,235-257,264-286,296-318,330-352,387-406
Sequence
Target Sequence 
>C. ELEGANS:180148_AT
ggatatgctctcaagcatctcctgctagcctgtgttggtcttggaacgatttatcaggca
ctgggctacttatcagtcatcttcacagatggtgttggaaagaatggatcaactgttgct
ggaacatcagttctcttcccagcctgcccacttcttgcagtcattgttccatattgtatg
atctacagcaaatcggcatctggcgtctatgatgatcttattgttatatttgttcttcaa
tttggagccgttgcggcaaaagccacaaatcgtctgattgttgcacacatgagcagaagt
gagctctcactttgggattggatctacatggggccaatcgcattgatgatcaatcaatac
tacgacatcaaaatcaatgagccaactcttctgaagtacacgactgtttacgtttatgca
tcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATATGCTCTCAAGCATCTCCTGC 368 509 784 Antisense
CTGCTAGCCTGTGTTGGTCTTGGAA 426 237 805 Antisense
GGCACTGGGCTACTTATCAGTCATC 476 535 840 Antisense
TGCTGGAACATCAGTTCTCTTCCCA 449 583 900 Antisense
ACTTCTTGCAGTCATTGTTCCATAT 337 103 933 Antisense
CAAATCGGCATCTGGCGTCTATGAT 508 193 972 Antisense
TCTTCAATTTGGAGCCGTTGCGGCA 501 607 1017 Antisense
GCGGCAAAAGCCACAAATCGTCTGA 656 291 1036 Antisense
GTGAGCTCTCACTTTGGGATTGGAT 324 483 1082 Antisense
GGATCTACATGGGGCCAATCGCATT 689 511 1103 Antisense
GACTGTTTACGTTTATGCATCACTT 14 375 1185 Antisense
Sequence Source Affymetrix Proprietary Database