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[180146_at]

Description Y26G10.1 /REP_DB=WormBase Gene ID /WP=CE19056 /TR=Q9XTV1 /GB=CAB11544.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 2.9
(-3)
A 		3.7
(-3)
A 		19.7
(-2.6)
A 		265.3
(3)
P 		262
B 38.1
(-1.9)
A 		11.1
(-2.8)
A 		3
(-3)
A 		201.7
(3)
P 		199
C 3.9
(-3)
A 		26.1
(-2.4)
A 		5
(-3)
A 		229.3
(3)
P 		225
avr 15
(-2.8) 		13.6
(-2.9) 		9.2
(-3) 		232.1
(3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 28.8
(-0.3)
A 		3.4
(-3)
A 		39.4
(0.8)
A 		4.1
(-2.9)
A 		4
(-2.9)
A 		60.7
(3)
P 		57
B 17.8
(-1.1)
A 		4.1
(-2.9)
A 		3.2
(-3)
A 		4.1
(-2.9)
A 		19.2
(-0.9)
A 		49.7
(3)
P 		47
C 3
(-3)
A 		31.7
(-1.7)
A 		3
(-3)
A 		5.2
(-2.9)
A 		2
(-3)
A 		141.7
(3)
P 		140
avr 16.5
(-2.1) 		13.1
(-2.4) 		15.2
(-2.2) 		4.5
(-3) 		8.4
(-2.7) 		84
(3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 1
(-3)
A 		0.8
(-3)
A 		5.1
(-2.3)
A 		38.8
(3)
P 		38
B 12.1
(-1.4)
A 		2.8
(-2.7)
A 		0.7
(-3)
A 		43
(3)
P 		42
C 1.3
(-3)
A 		7.5
(-2)
A 		1.7
(-2.9)
A 		38.7
(3)
P 		37
avr 4.8
(-2.6) 		3.7
(-2.8) 		2.5
(-3) 		40.2
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 5.3
(-1.1)
A 		1.2
(-2.9)
A 		8.6
(0.3)
A 		1
(-3)
A 		1.2
(-2.9)
A 		14.8
(3)
P 		14
B 6.2
(-1.2)
A 		1.4
(-2.8)
A 		0.8
(-3)
A 		1.1
(-2.9)
A 		7.8
(-0.6)
A 		18.5
(3)
P 		18
C 1.1
(-2.9)
A 		9.7
(-1.8)
A 		0.8
(-3)
A 		1.1
(-2.9)
A 		0.6
(-3)
A 		47.4
(3)
P 		47
avr 4.2
(-2.3) 		4.1
(-2.3) 		3.4
(-2.5) 		1.1
(-3) 		3.2
(-2.5) 		26.9
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180146_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13082
Sequence Type Exemplar sequence
Representative Public ID Y26G10.1 NCBI
Target Description Y26G10.1 /REP_DB=WormBase Gene ID /WP=CE19056 /TR=Q9XTV1 /GB=CAB11544.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075075 NCBI Caenorhabditis elegans Y26G10.1 (Y26G10.1) mRNA, complete cds. 11/11 None
SNAP00000032552 ENSEMBL cdna:SNAP chromosome:CEL140:V:17695078:17696907:-1 9/11 None
GENEFINDER00000032556 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17695078:17699424:-1 11/11 None
Y26G10.1 ENSEMBL cdna:known chromosome:CEL140:V:17694964:17701773:-1 gene:Y26G10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17694963-17701773(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y26G10.1
Entrez Gene 189553 Entrez gene
SwissProt Q9XTV1 EMBL-EBI
WormBase CE19056 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB11544 Hypothetical protein Y26G10.1 [Caenorhabditis elegans] ref|NP_507476.1| Y26G10.1 [Caenorhabditis elegans] 0.0
blast CAB11544 Hypothetical protein Y26G10.1 [Caenorhabditis elegans] ref|NP_507476.1| Y26G10.1 [Caenorhabditis elegans] 4.0E-91
blast CAB11544 Hypothetical protein Y26G10.1 [Caenorhabditis elegans] ref|NP_507476.1| Y26G10.1 [Caenorhabditis elegans] 8.0E-54
blast NP_504960 C50E3.7 [Caenorhabditis elegans] gb|AAB04882.1| Hypothetical protein C50E3.7 [Caenorhabditis elegans] 3.0E-30
blast CAA22112 Hypothetical protein Y75B8A.34 [Caenorhabditis elegans] ref|NP_499606.1| Y75B8A.34 [Caenorhabditis elegans] 1.0E-27
blast NP_504960 C50E3.7 [Caenorhabditis elegans] gb|AAB04882.1| Hypothetical protein C50E3.7 [Caenorhabditis elegans] 8.0E-26
blast NP_504960 C50E3.7 [Caenorhabditis elegans] gb|AAB04882.1| Hypothetical protein C50E3.7 [Caenorhabditis elegans] 1.0E-24
blast CAE58058 Hypothetical protein CBG01137 [Caenorhabditis briggsae] 7.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507476.1 11 53-75,88-110,139-156,176-198,224-243,263-285,300-322,485-507,527-549,570-589,614-636
Y26G10.1 11 53-75,88-110,139-156,176-198,224-243,263-285,300-322,485-507,527-549,570-589,614-636
SNAP00000032552 4 28-47,72-94,115-137,152-174
GENEFINDER00000032556 6 5-27,156-178,199-218,243-265,286-308,323-345
Sequence
Target Sequence 
>C. ELEGANS:180146_AT
gtggtccaggttgctatgtggttcgattggtttggagattatttttcggcggaaatgata
tttttgatggcttttaatcggtgtattcattttgcagcaaaacccgttagtttgtgggtt
tttacaagagctcgtatcctgttcctcgtttccctatgtgcatttctggcatccatcgct
gcagtgattcttatccaaacctcagaactccggagaatttatatccgaagaatcggattc
gtggataccggctatccgggctaccaaatgctcattaaccggattttctacatttttccg
tttggatccatcatttgttatattgtgctttatttccatgttcggagaatgacacagcaa
gtcctgtccagaagaacttcggaaaacggaaaacagagagtttttgtgcagcttttcatc
actattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTCCAGGTTGCTATGTGGTTCG 653 487 1585 Antisense
TTACAAGAGCTCGTATCCTGTTCCT 54 683 1706 Antisense
TATGTGCATTTCTGGCATCCATCGC 61 657 1739 Antisense
CCATCGCTGCAGTGATTCTTATCCA 419 271 1757 Antisense
TATCCAAACCTCAGAACTCCGGAGA 552 645 1776 Antisense
ATCGGATTCGTGGATACCGGCTATC 403 35 1816 Antisense
CTATCCGGGCTACCAAATGCTCATT 162 225 1836 Antisense
ATGCTCATTAACCGGATTTTCTACA 19 43 1852 Antisense
ATTGTGCTTTATTTCCATGTTCGGA 255 5 1906 Antisense
ATGACACAGCAAGTCCTGTCCAGAA 111 45 1933 Antisense
TTGTGCAGCTTTTCATCACTATTCT 376 709 1988 Antisense
Sequence Source Affymetrix Proprietary Database