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[180144_at]

Description T22H9.1 /REP_DB=WormBase Gene ID /WP=CE21711 /TR=Q9N514 /GB=AAF60534.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 105.7
(-1.2)
A 		54.5
(-3)
A 		70.2
(-2.4)
A 		220.8
(3)
M 		166
B 74.3
(-3)
A 		80.4
(-2.7)
A 		89.7
(-2.2)
A 		191.2
(3)
P 		117
C 93.9
(-1.6)
A 		70.1
(-3)
A 		79.1
(-2.5)
A 		174.6
(3)
A 		105
avr 91.3
(-1.9) 		68.3
(-3) 		79.7
(-2.5) 		195.5
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 64.4
(1.3)
A 		76.4
(2.3)
A 		34.8
(-1.1)
A 		10.4
(-3)
A 		67.5
(1.6)
A 		85.6
(3)
A 		75
B 96.6
(3)
A 		80.5
(1.3)
A 		50.2
(-2)
A 		41.4
(-3)
A 		72.7
(0.4)
A 		60
(-1)
A 		55
C 115.2
(2)
A 		31.4
(-2.2)
A 		21.6
(-2.7)
A 		56.5
(-1)
A 		16.2
(-3)
A 		135.2
(3)
A 		119
avr 92.1
(2.8) 		62.8
(-0.2) 		35.5
(-3) 		36.1
(-2.9) 		52.1
(-1.3) 		93.6
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 38.5
(3)
A 		11.8
(-3)
A 		18.3
(-1.5)
A 		32.3
(1.6)
M 		27
B 23.7
(-1.9)
A 		19.9
(-3)
A 		20.8
(-2.7)
A 		40.7
(3)
P 		21
C 31.1
(3)
A 		20.1
(-3)
A 		27.6
(1.1)
A 		29.4
(2.1)
A 		11
avr 31.1
(1.9) 		17.3
(-3) 		22.2
(-1.3) 		34.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 11.9
(-0.7)
A 		27.2
(3)
A 		7.6
(-1.8)
A 		2.6
(-3)
A 		20.4
(1.3)
A 		20.9
(1.5)
A 		25
B 33.6
(3)
A 		26.8
(1.2)
A 		12.2
(-2.7)
A 		11
(-3)
A 		29.5
(1.9)
A 		22.4
(0)
A 		23
C 42.7
(2.6)
A 		9.6
(-2.3)
A 		5.5
(-3)
A 		11.4
(-2.1)
A 		5.2
(-3)
A 		45.3
(3)
A 		40
avr 29.4
(3) 		21.2
(0.7) 		8.4
(-3) 		8.3
(-3) 		18.4
(-0.1) 		29.5
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180144_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15877
Sequence Type Exemplar sequence
Representative Public ID T22H9.1 NCBI
Target Description T22H9.1 /REP_DB=WormBase Gene ID /WP=CE21711 /TR=Q9N514 /GB=AAF60534.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070778(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070778 NCBI Caenorhabditis elegans T22H9.1 (T22H9.1) mRNA, complete cds. 11/11 None
SNAP00000018380 ENSEMBL cdna:SNAP chromosome:CEL140:V:360822:375992:1 11/11 None
GENEFINDER00000018383 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:359595:363423:1 11/11 None
T22H9.1 ENSEMBL cdna:known chromosome:CEL140:V:359595:363497:1 gene:T22H9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:359594-363423(+) 97.82 100.0
Public Domain and Genome References
Gene Title
Ensembl T22H9.1
Entrez Gene 178562 Entrez gene
SwissProt Q8MNX1 EMBL-EBI
WormBase CE21711 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1637951_AT dm
DROSGENOME1:142771_AT dm
HU35KSUBD:RC_AA488439_AT chromosome 6 open reading frame 153 hs
U133_X3P:HS.283636.0.S1_3P_AT chromosome 6 open reading frame 153 hs
HG-U133_PLUS_2:225788_AT chromosome 6 open reading frame 153 hs
HG-U133B:225788_AT chromosome 6 open reading frame 153 hs
HG-U95B:48042_AT chromosome 6 open reading frame 153 hs
HG-U95C:59580_S_AT chromosome 6 open reading frame 153 hs
HG-U133_PLUS_2:239592_AT Chromosome 6 open reading frame 153 hs
HG-U133B:239592_AT Chromosome 6 open reading frame 153 hs
U133_X3P:HS.203186.1.A1_3P_AT Chromosome 6 open reading frame 153 hs
U133_X3P:HS.203186.1.A1_3P_S_AT Chromosome 6 open reading frame 153 hs
MOUSE430_2:1424728_AT cDNA sequence BC011248 mm
MOE430A:1424728_AT cDNA sequence BC011248 mm
MOUSE430A_2:1424728_AT cDNA sequence BC011248 mm
MG-U74BV2:107383_AT cDNA sequence BC011248 mm
MG-U74CV2:135708_AT cDNA sequence BC011248 mm
Protein Similarities
Method ID Description E-Value
blast AAM34816 Hypothetical protein T22H9.1 [Caenorhabditis elegans] ref|NP_503179.1| T22H9.1 [Caenorhabditis elegans] 0.0
blast AAV28322 Hypothetical protein Y39D8B.1 [Caenorhabditis elegans] ref|NP_503181.2| Y39D8B.1 [Caenorhabditis elegans] 0.0
blast CAE58270 Hypothetical protein CBG01376 [Caenorhabditis briggsae] 0.0
blast CAE58271 Hypothetical protein CBG01377 [Caenorhabditis briggsae] 0.0
blast CAE58272 Hypothetical protein CBG01378 [Caenorhabditis briggsae] 1.0E-120
blast H88925 protein T22H9.1 [imported] - Caenorhabditis elegans 4.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR009292 EMBL-EBI Protein of unknown function DUF947 2.2E-93
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Pfam IPR009292 EMBL-EBI Protein of unknown function DUF947 2.2E-93
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000018380 4 1007-1029,1036-1058,1078-1100,1107-1129
Sequence
Target Sequence 
>C. ELEGANS:180144_AT
gacaagggccaacatcggccgagggaaatgtcgtcgaaacggcccgtttcggcgtttagg
aatatttatggaggacacgagcaggagaagaagaagaaaaaatgggatccccgattcgac
gcaagagccggcgacttcaaggaagtctgcttcgagaacaactatcagttcctcgacgaa
atccgtaccggcgagatgcaggacctgcgtaacgagtacaatacagcacgggcggaaggc
gacgagaaaaaagcggagagactgaaaaatacacttcacaaaatggagactcgggagaag
acgcgagccgagaagcgacgacacgcggaaacacgaaaagaactgcacgatgacaatatc
gaacgaatgctgcgcggagaggcgccgatcttcaggacgaaggcacaagttcgccgaatc
gatgccgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAGGGCCAACATCGGCCGAGGG 286 357 835 Antisense
AAAATGGGATCCCCGATTCGACGCA 488 131 933 Antisense
CAAGAGCCGGCGACTTCAAGGAAGT 287 181 956 Antisense
GAAGTCTGCTTCGAGAACAACTATC 123 337 976 Antisense
CAGTTCCTCGACGAAATCCGTACCG 614 203 1000 Antisense
ATCCGTACCGGCGAGATGCAGGACC 211 39 1015 Antisense
ATACAGCACGGGCGGAAGGCGACGA 408 7 1055 Antisense
GACGCGAGCCGAGAAGCGACGACAC 475 377 1134 Antisense
GAATGCTGCGCGGAGAGGCGCCGAT 545 329 1199 Antisense
AGGCGCCGATCTTCAGGACGAAGGC 205 49 1214 Antisense
CAAGTTCGCCGAATCGATGCCGAGA 554 183 1240 Antisense
Sequence Source Affymetrix Proprietary Database