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[180143_at]

Description F14F9.5 /REP_DB=WormBase Gene ID /WP=CE19792 /TR=Q9GUC9 /GB=AAF98622.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 42      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 59.1
(-3)
A 		229.7
(3)
P 		138.5
(-0.2)
P 		93.1
(-1.8)
A 		171
B 63.2
(-3)
A 		134.4
(3)
P 		128.4
(2.5)
P 		77.9
(-1.8)
P 		71
C 83.2
(-3)
A 		159.9
(3)
P 		128.6
(0.6)
P 		99.8
(-1.7)
P 		77
avr 68.5
(-3) 		174.7
(3) 		131.8
(0.6) 		90.3
(-1.8) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 81.9
(-3)
M 		210.7
(-0.3)
P 		238.1
(0.2)
P 		370.8
(3)
P 		290.6
(1.3)
P 		115
(-2.3)
P 		289
B 88.6
(-3)
A 		186.7
(0)
P 		282.7
(3)
P 		255.2
(2.1)
P 		184.2
(-0)
P 		110.3
(-2.3)
P 		194
C 71.1
(-3)
M 		300.6
(2.7)
P 		195.1
(0.1)
P 		313.8
(3)
P 		133.8
(-1.4)
P 		195.1
(0.1)
P 		243
avr 80.5
(-3) 		232.7
(0.9) 		238.6
(1.1) 		313.3
(3) 		202.9
(0.2) 		140.1
(-1.5) 		233
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 21.5
(-1.7)
A 		49.9
(3)
P 		36.2
(0.7)
P 		13.6
(-3)
A 		36
B 20.2
(-1.7)
A 		33.2
(3)
P 		29.7
(1.7)
P 		16.6
(-3)
P 		17
C 27.5
(-0.8)
A 		46
(3)
P 		44.8
(2.8)
P 		16.8
(-3)
P 		29
avr 23.1
(-1.4) 		43
(3) 		36.9
(1.7) 		15.7
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 15.1
(-3)
M 		75
(1.5)
P 		51.9
(-0.2)
P 		94.1
(3)
P 		87.7
(2.5)
P 		28
(-2)
P 		79
B 30.8
(-3)
A 		62.1
(1.3)
P 		68.7
(2.2)
P 		67.6
(2)
P 		74.8
(3)
P 		41.1
(-1.6)
P 		44
C 26.3
(-3)
M 		91.7
(3)
P 		49.6
(-0.9)
P 		63.1
(0.4)
P 		43.3
(-1.4)
P 		65.3
(0.6)
P 		65
avr 24.1
(-3) 		76.3
(3) 		56.7
(0.7) 		74.9
(2.8) 		68.6
(2.1) 		44.8
(-0.6) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180143_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15875
Sequence Type Exemplar sequence
Representative Public ID F14F9.5 NCBI
Target Description F14F9.5 /REP_DB=WormBase Gene ID /WP=CE19792 /TR=Q9GUC9 /GB=AAF98622.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071972(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071972 NCBI Caenorhabditis elegans F14F9.5 (F14F9.5) mRNA, complete cds. 10/11 None
SNAP00000039405 ENSEMBL cdna:SNAP chromosome:CEL140:V:5128234:5129829:1 10/11 None
GENEFINDER00000039419 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5127145:5129829:1 10/11 None
F14F9.5 ENSEMBL cdna:known chromosome:CEL140:V:5127058:5129873:1 gene:F14F9.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5127057-5129829(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14F9.5
Entrez Gene 184485 Entrez gene
SwissProt Q9GUC9 EMBL-EBI
WormBase CE35275 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504373 F14F9.5 [Caenorhabditis elegans] gb|AAF98622.2| Hypothetical protein F14F9.5 [Caenorhabditis elegans] 1.0E-176
blast NP_504373 F14F9.5 [Caenorhabditis elegans] gb|AAF98622.2| Hypothetical protein F14F9.5 [Caenorhabditis elegans] 1.0E-171
blast CAE64079 Hypothetical protein CBG08683 [Caenorhabditis briggsae] 1.0E-156
blast CAE64079 Hypothetical protein CBG08683 [Caenorhabditis briggsae] 1.0E-153
blast NP_504373 F14F9.5 [Caenorhabditis elegans] gb|AAF98622.2| Hypothetical protein F14F9.5 [Caenorhabditis elegans] 1.0E-144
blast CAE64079 Hypothetical protein CBG08683 [Caenorhabditis briggsae] 1.0E-129
blast EAA73454 hypothetical protein FG03986.1 [Gibberella zeae PH-1] ref|XP_384162.1| hypothetical protein FG03986.1 [Gibberella zeae PH-1] 9.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 5.9E-13
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 2.1E-5
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.6E-9
Sequence
Target Sequence 
>C. ELEGANS:180143_AT
gattcatttttggtcactccatcttgactatacatcctatgggccttacgcagcaaataa
caaattggtggacaaactcgatcagattatggctggagaaaatgttggtatgtacataaa
tctggattttacaattcaaggaactttgagctctatttcaggacgtggtcctcaaatcta
cgagattcttaatcttccaatgatgaaaaagtggatggaaaaggtggaagatgttccgat
tttcatagccggcgactttaacggaccctcacatctcgattggacagaacagacaaaaaa
gattcatggggattgggtgatacggtggcctgcaaccaaggagctagaagaacgagaatt
cagtgatacattcagggaaatatacccaaacgttgtttcagatccaggaatcacgtggtc
aacagtaaacaagttcaatccagaatggaattatacgattccagagccacaggatcggat
agatttcttgttttataaaggaccagttgttccgtatcaaatattgacatacagtggatg
cgagaaaccgcaacgaattccgtttcactcgaaaaatgactacccatccgatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCATTTTTGGTCACTCCATCTT 384 431 384 Antisense
CACTCCATCTTGACTATACATCCTA 41 199 398 Antisense
ATCCTATGGGCCTTACGCAGCAAAT 615 39 417 Antisense
TGAGCTCTATTTCAGGACGTGGTCC 452 567 530 Antisense
GGACGTGGTCCTCAAATCTACGAGA 683 521 544 Antisense
GATTTTCATAGCCGGCGACTTTAAC 648 427 621 Antisense
ACCCTCACATCTCGATTGGACAGAA 312 91 648 Antisense
GGGATTGGGTGATACGGTGGCCTGC 370 495 692 Antisense
GTGGCCTGCAACCAAGGAGCTAGAA 166 491 708 Antisense
CCGCAACGAATTCCGTTTCACTCGA 199 263 931 Antisense
GAAAAATGACTACCCATCCGATCAT 476 355 954 Antisense
Sequence Source Affymetrix Proprietary Database