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[180142_at]

Description C49G7.6 /REP_DB=WormBase Gene ID /WP=CE08864 /TR=O16223 /GB=AAK18906.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.2
(-3)
A 		2.7
(-0.6)
A 		1.4
(-2.7)
A 		4.9
(3)
A 		4
B 0.8
(-3)
A 		1.2
(-2.8)
A 		0.8
(-3)
A 		15.2
(3)
A 		14
C 1.1
(-2.4)
A 		1.4
(-0.6)
A 		1
(-3)
A 		2
(3)
A 		1
avr 1
(-3) 		1.8
(-2.3) 		1.1
(-2.9) 		7.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 19.2
(3)
A 		0.9
(-3)
A 		2.1
(-2.6)
A 		3.3
(-2.2)
A 		1.4
(-2.8)
A 		0.9
(-3)
A 		18
B 0.8
(-3)
A 		2.7
(-2.2)
A 		14.4
(3)
A 		1.2
(-2.8)
A 		0.8
(-3)
A 		3.3
(-1.9)
A 		14
C 1.5
(-3)
A 		2.6
(-2.3)
A 		3.9
(-1.4)
A 		3.1
(-1.9)
A 		1.8
(-2.8)
A 		10.6
(3)
A 		9
avr 7.2
(3) 		2.1
(-2.2) 		6.8
(2.6) 		2.5
(-1.8) 		1.3
(-3) 		4.9
(0.7) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.4
(-3)
A 		0.6
(1)
A 		0.4
(-3)
A 		0.7
(3)
A 		0
B 0.2
(-3)
A 		0.3
(-2.8)
A 		0.2
(-3)
A 		3.2
(3)
A 		3
C 0.4
(3)
A 		0.4
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0
avr 0.3
(-3) 		0.4
(-2.5) 		0.3
(-3) 		1.4
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 3.5
(3)
A 		0.3
(-2.8)
A 		0.5
(-2.5)
A 		0.8
(-1.9)
A 		0.4
(-2.6)
A 		0.2
(-3)
A 		3
B 0.3
(-3)
A 		0.9
(-1.9)
A 		3.5
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		1.2
(-1.3)
A 		3
C 0.5
(-3)
A 		0.8
(-2.4)
A 		1
(-2)
A 		0.6
(-2.8)
A 		0.6
(-2.8)
A 		3.6
(3)
A 		3
avr 1.4
(1.6) 		0.7
(-1.6) 		1.7
(3) 		0.6
(-2.1) 		0.4
(-3) 		1.7
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180142_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15874
Sequence Type Exemplar sequence
Representative Public ID C49G7.6 NCBI
Target Description C49G7.6 /REP_DB=WormBase Gene ID /WP=CE08864 /TR=O16223 /GB=AAK18906.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071726
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071726 NCBI Caenorhabditis elegans C49G7.6 (C49G7.6) mRNA, complete cds. None
C49G7.6 ENSEMBL cdna:known chromosome:CEL140:V:4041098:4041357:1 gene:C49G7.6 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4041097-4041707(+) 67.97 100.0
Public Domain and Genome References
Gene Title
Ensembl C49G7.6
Entrez Gene 183620 Entrez gene
SwissProt O16223 EMBL-EBI
WormBase CE36802 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18906 Hypothetical protein C49G7.6 [Caenorhabditis elegans] ref|NP_504127.2| C49G7.6 [Caenorhabditis elegans] 6.0E-41
Sequence
Target Sequence 
>C. ELEGANS:180142_AT
atgcttcagtccaaattttatcgtttgaatcgattttccgggcggccattttttgtcctg
gaaaatatattggatcaattccgaaactctcgaaaattattttataattttgaaaaaaaa
acaattctgttcgatttcccaaaaacaataaaaaaaatattaaaaacccaaaatggaacc
aaaatgacaaaatattacatactgaaaattttcaatttctcacaattagcaattcctcac
gaacgttcaatttttagcattctatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTTCAGTCCAAATTTTATCGTT 179 41 13 Antisense
TCGTTTGAATCGATTTTCCGGGCGG 182 603 33 Antisense
TGAATCGATTTTCCGGGCGGCCATT 561 573 38 Antisense
TTTTTTGTCCTGGAAAATATATTGG 379 675 61 Antisense
ATTGGATCAATTCCGAAACTCTCGA 251 3 81 Antisense
ATCAATTCCGAAACTCTCGAAAATT 659 19 86 Antisense
AAATTTTCAATTTCTCACAATTAGC 548 113 218 Antisense
TTCTCACAATTAGCAATTCCTCACG 367 691 229 Antisense
ATTAGCAATTCCTCACGAACGTTCA 142 11 237 Antisense
GCAATTCCTCACGAACGTTCAATTT 68 323 241 Antisense
AACGTTCAATTTTTAGCATTCTATT 43 145 254 Antisense
Sequence Source Affymetrix Proprietary Database