[Home] | [Total List]

[180141_at]

Description K03B4.2 /REP_DB=WormBase Gene ID /WP=CE07322 /TR=Q21173 /GB=AAA97997.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 94      6grp_total > 97      4grp_total > 04      6grp_highest_sub > Da      6grp_cgc > 69      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 737
1 2 3 4 range
A 695.1
(-0.9)
P 		526.6
(-2.9)
P 		515.1
(-3)
P 		1034.8
(3)
P 		520
B 721.5
(-1.4)
P 		535.9
(-3)
P 		545.4
(-2.9)
P 		1252.4
(3)
P 		717
C 761.7
(-1)
P 		544.2
(-3)
P 		640.3
(-2.1)
P 		1195.3
(3)
P 		651
avr 726.1
(-1.2) 		535.6
(-3) 		566.9
(-2.7) 		1160.8
(3) 		625

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 730
1 2 3 4 5 6 range
A 349.8
(-3)
P 		561.4
(-1.2)
P 		530.6
(-1.5)
P 		657.6
(-0.4)
P 		661
(-0.4)
P 		1071.4
(3)
P 		722
B 472.9
(-1.2)
P 		341.7
(-3)
P 		599.6
(0.5)
P 		474.4
(-1.2)
P 		675.4
(1.5)
P 		789.1
(3)
P 		447
C 700.4
(1)
P 		346
(-3)
P 		595
(-0.2)
P 		484.8
(-1.4)
P 		871.8
(3)
P 		774.1
(1.9)
P 		526
avr 507.7
(-1.8) 		416.4
(-3) 		575.1
(-0.9) 		538.9
(-1.4) 		736.1
(1.2) 		878.2
(3) 		462
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 253.1
(3)
P 		114.3
(-3)
P 		134.6
(-2.1)
P 		151.5
(-1.4)
P 		139
B 230.1
(1.4)
P 		132.3
(-2.7)
P 		126.4
(-3)
P 		266.9
(3)
P 		141
C 252.1
(3)
P 		156.4
(-3)
P 		223.2
(1.2)
P 		201.5
(-0.2)
P 		96
avr 245.1
(3) 		134.3
(-3) 		161.4
(-1.5) 		206.6
(0.9) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 64.5
(-3)
P 		199.7
(1.1)
P 		115.5
(-1.4)
P 		166.8
(0.1)
P 		199.5
(1.1)
P 		260.8
(3)
P 		196
B 164.5
(-1.3)
P 		113.7
(-3)
P 		145.6
(-1.9)
P 		125.7
(-2.6)
P 		274.4
(2.3)
P 		294.2
(3)
P 		181
C 259.6
(2.3)
P 		105.6
(-2.7)
P 		151.4
(-1.2)
P 		97.5
(-3)
P 		282.1
(3)
P 		259.1
(2.3)
P 		185
avr 162.9
(-1.6) 		139.7
(-2.6) 		137.5
(-2.7) 		130
(-3) 		252
(2.2) 		271.4
(3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180141_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15871
Sequence Type Exemplar sequence
Representative Public ID K03B4.2 NCBI
Target Description K03B4.2 /REP_DB=WormBase Gene ID /WP=CE07322 /TR=Q21173 /GB=AAA97997.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071860(9), NM_071861(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071860 NCBI Caenorhabditis elegans TAF (TBP-associated transcription factor) family member (taf-10) (taf-10) mRNA, complete cds. 9/11 None
NM_071861 NCBI Caenorhabditis elegans K03B4.2 (K03B4.2) mRNA, complete cds. 11/11 None
SNAP00000000713 ENSEMBL cdna:SNAP chromosome:CEL140:V:4687821:4688688:1 11/11 None
GENEFINDER00000000716 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4687821:4690211:1 11/11 None
K03B4.3a ENSEMBL cdna:known chromosome:CEL140:V:4686923:4688604:1 gene:K03B4.3 9/11 A 
K03B4.2 ENSEMBL cdna:known chromosome:CEL140:V:4687808:4689035:1 gene:K03B4.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3564983 2 1 NM_071860 180141_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4687820-4688688(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03B4.3
K03B4.2
Entrez Gene 178858 Entrez gene
SwissProt Q21173 EMBL-EBI
WormBase CE07322 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97998 Hypothetical protein K03B4.1 [Caenorhabditis elegans] ref|NP_504263.1| K03B4.1 [Caenorhabditis elegans] 1.0E-105
blast AAA97996 Taf (tbp-associated transcription factor) family protein 10, isoform a [Caenorhabditis elegans] ref|NP_504261.1| TAF (TBP-associated transcription factor) family member (taf-10) [Caenorhabditis elegans] 1.0E-87
blast CAE64173 Hypothetical protein CBG08796 [Caenorhabditis briggsae] 1.0E-87
blast AAK82906 Taf (tbp-associated transcription factor) family protein 10, isoform b [Caenorhabditis elegans] ref|NP_504260.1| TAF (TBP-associated transcription factor) family member (taf-10) [Caenorhabditis elegans] 3.0E-86
blast CAE64171 Hypothetical protein CBG08794 [Caenorhabditis briggsae] 3.0E-62
blast AAA97997 Hypothetical protein K03B4.2 [Caenorhabditis elegans] ref|NP_504262.1| K03B4.2 [Caenorhabditis elegans] 3.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR003923 EMBL-EBI Transcription initiation factor TFIID, 23-30 kDa subunit 1.9E-33
Sequence
Target Sequence 
>C. ELEGANS:180141_AT
cacacgcgacgatgactatgacagtgatccagaagttcaggcggagaaggaaatggccaa
gaaagatccaatcggctttgcgatcgactcgagctcgctgacttcgatgaagaaggcggc
ggctgcggccgcgaaggatcaggtctccacaactccaccaaatctagtcatcggaagcaa
tggaggcgccggcacgatcgcaaccgtcccccgttccaagtcgcaagacgagattgtaaa
gaagcaaaagactgccggccaaagcaaggctctcaagaagcaacgctctcgcggaatctc
gggatgctcttctcgcaaatactcgggatacgacgatgaaatggatgaggatttcggcga
cgatgaagactacgaccactacggaggccaagaggttttcgacgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACACGCGACGATGACTATGACAGT 444 195 27 Antisense
GATCCAATCGGCTTTGCGATCGACT 606 415 91 Antisense
TTTGCGATCGACTCGAGCTCGCTGA 623 667 103 Antisense
TGAAGAAGGCGGCGGCTGCGGCCGC 271 573 134 Antisense
ACAACTCCACCAAATCTAGTCATCG 405 113 175 Antisense
CCCCGTTCCAAGTCGCAAGACGAGA 413 255 235 Antisense
AGACTGCCGGCCAAAGCAAGGCTCT 528 71 275 Antisense
AAGAAGCAACGCTCTCGCGGAATCT 153 153 301 Antisense
GCTCTTCTCGCAAATACTCGGGATA 425 299 332 Antisense
TGAAGACTACGACCACTACGGAGGC 616 573 390 Antisense
GGAGGCCAAGAGGTTTTCGACGAGG 130 495 409 Antisense
Sequence Source Affymetrix Proprietary Database