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[180140_at] G-protein coupled receptor, srh family

Description F40D4.11 /REP_DB=WormBase Gene ID /WP=CE19845 /TR=Q9XV25 /GB=CAB04369.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 15      6grp_cgc > 16      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 18.1
(0.8)
A 		8.3
(-2.2)
A 		5.9
(-3)
A 		25
(3)
A 		19
B 53.3
(3)
A 		18.3
(-2.5)
A 		15.4
(-3)
A 		42.1
(1.2)
A 		38
C 6.6
(-3)
A 		13.6
(-0.5)
A 		23.7
(3)
A 		8.2
(-2.4)
A 		17
avr 26
(3) 		13.4
(-3) 		15
(-2.2) 		25.1
(2.6) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 40.1
(3)
A 		28.2
(0.9)
A 		14.8
(-1.6)
A 		11.1
(-2.2)
A 		6.8
(-3)
A 		12.8
(-1.9)
A 		33
B 26.5
(-0.9)
A 		18.6
(-1.9)
A 		11.5
(-2.8)
A 		9.6
(-3)
A 		29.6
(-0.5)
A 		57.9
(3)
A 		48
C 32.6
(3)
A 		23.7
(1.1)
A 		10.2
(-1.8)
A 		6.6
(-2.6)
A 		4.8
(-3)
A 		7
(-2.5)
A 		28
avr 33.1
(3) 		23.5
(0.6) 		12.2
(-2.2) 		9.1
(-3) 		13.7
(-1.9) 		25.9
(1.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 6.6
(3)
A 		1.8
(-2.6)
A 		1.5
(-3)
A 		3.7
(-0.4)
A 		5
B 17
(3)
A 		4.5
(-2.6)
A 		3.6
(-3)
A 		9
(-0.6)
A 		13
C 2.2
(-2.3)
A 		3.9
(-0.8)
A 		8.3
(3)
A 		1.4
(-3)
A 		7
avr 8.6
(3) 		3.4
(-3) 		4.5
(-1.7) 		4.7
(-1.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7.4
(1.1)
A 		10
(3)
A 		3.2
(-2.1)
A 		2.8
(-2.4)
A 		2
(-3)
A 		3.1
(-2.2)
A 		8
B 9.2
(-0.9)
A 		6.2
(-1.9)
A 		2.8
(-2.9)
A 		2.6
(-3)
A 		12
(-0)
A 		21.6
(3)
A 		19
C 12.1
(3)
A 		7.2
(0.3)
A 		2.6
(-2.3)
A 		1.3
(-3)
A 		1.6
(-2.8)
A 		2.3
(-2.4)
A 		11
avr 9.6
(3) 		7.8
(1.5) 		2.9
(-2.4) 		2.2
(-3) 		5.2
(-0.6) 		9
(2.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180140_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14782
Sequence Type Exemplar sequence
Representative Public ID F40D4.11 NCBI
Target Description F40D4.11 /REP_DB=WormBase Gene ID /WP=CE19845 /TR=Q9XV25 /GB=CAB04369.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074940(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074940 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-102) (srh-102) mRNA, complete cds. 11/11 None
SNAP00000026445 ENSEMBL cdna:SNAP chromosome:CEL140:V:17165478:17166082:-1 11/11 None
F40D4.11 ENSEMBL cdna:known chromosome:CEL140:V:17165478:17168087:-1 gene:F40D4.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17165548-17168087(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-102
Ensembl F40D4.11
Entrez Gene 185529 Entrez gene
SwissProt Q9XV25 EMBL-EBI
WormBase CE33084 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04369 Hypothetical protein F40D4.11 [Caenorhabditis elegans] ref|NP_507341.2| Serpentine Receptor, class H family member (srh-102) [Caenorhabditis elegans] 0.0
blast CAB04369 Hypothetical protein F40D4.11 [Caenorhabditis elegans] ref|NP_507341.2| Serpentine Receptor, class H family member (srh-102) [Caenorhabditis elegans] 9.0E-99
blast CAC35812 Hypothetical protein F21H7.11 [Caenorhabditis elegans] ref|NP_507100.2| Serpentine Receptor, class H family member (srh-95) [Caenorhabditis elegans] 7.0E-95
blast C88108 protein C46E10.7 [imported] - Caenorhabditis elegans 4.0E-88
blast CAC35812 Hypothetical protein F21H7.11 [Caenorhabditis elegans] ref|NP_507100.2| Serpentine Receptor, class H family member (srh-95) [Caenorhabditis elegans] 2.0E-40
blast CAB04439 Hypothetical protein F49H6.4 [Caenorhabditis elegans] ref|NP_507308.1| Serpentine Receptor, class H family member (srh-97) [Caenorhabditis elegans] 7.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.0E-72
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507341.2 7 29-51,71-93,108-130,151-173,218-240,261-283,293-315
F40D4.11 7 29-51,71-93,108-130,151-173,218-240,261-283,293-315
SNAP00000026445 3 52-74,95-117,127-149
Sequence
Target Sequence 
>C. ELEGANS:180140_AT
aacagcagtactggactcgttgaacatttacccatgcccaacaagagaatttttcgagtt
tccagttttaataatgtctactgatgagcacatcttgcgctggttaacctggtttttttt
gccgctgttcgttttgaacggtggtgcaaacgcaacatttcacattgtcacgacaattta
ttatttgtatgttgtgccgccaagcacaatttcacgagaaactcagcaaaatcagaaggc
atttctcaaagcaattacatttcaattagctgttccgtttcttctcgcagatacacctgt
ttttattatcactgtaatctattcaacggggtattacactcaaaaatctatgaatcttgt
tattgacattttggctcttcatggaattggcgaaggtattgcgatcatcactgtacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAGCAGTACTGGACTCGTTGAAC 239 135 540 Antisense
GTTGAACATTTACCCATGCCCAACA 452 439 558 Antisense
CACATCTTGCGCTGGTTAACCTGGT 167 195 628 Antisense
TTGCCGCTGTTCGTTTTGAACGGTG 108 701 658 Antisense
GCAACATTTCACATTGTCACGACAA 688 319 691 Antisense
TATTTGTATGTTGTGCCGCCAAGCA 622 661 721 Antisense
GCCGCCAAGCACAATTTCACGAGAA 572 285 735 Antisense
TTCAATTAGCTGTTCCGTTTCTTCT 287 685 800 Antisense
GTTTCTTCTCGCAGATACACCTGTT 206 451 816 Antisense
GACATTTTGGCTCTTCATGGAATTG 301 371 904 Antisense
GGTATTGCGATCATCACTGTACACA 400 505 934 Antisense
Sequence Source Affymetrix Proprietary Database