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[180138_at]

Description F36G9.13 /REP_DB=WormBase Gene ID /WP=CE15990 /TR=O45471 /GB=CAB04332.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 6.8
(-2.8)
A 		60.4
(3)
A 		4.9
(-3)
A 		13.3
(-2.1)
A 		56
B 28.1
(-1.1)
A 		10
(-3)
A 		18.5
(-2.1)
A 		66.3
(3)
A 		56
C 7.3
(-2.9)
A 		32.3
(3)
A 		6.8
(-3)
A 		23.6
(1)
A 		26
avr 14.1
(-2) 		34.2
(3) 		10.1
(-3) 		34.4
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 4.3
(-2.8)
A 		21.5
(1)
A 		12.9
(-0.9)
A 		3.2
(-3)
A 		7.6
(-2)
A 		30.5
(3)
A 		27
B 7.6
(-2.3)
A 		5.7
(-3)
A 		21.6
(2.8)
A 		6.5
(-2.7)
A 		22.1
(3)
A 		13.8
(-0)
A 		16
C 8
(-2.1)
A 		39.4
(3)
A 		2.5
(-3)
A 		4.5
(-2.7)
A 		9.8
(-1.8)
A 		6.2
(-2.4)
A 		37
avr 6.6
(-2.3) 		22.2
(3) 		12.3
(-0.4) 		4.7
(-3) 		13.2
(-0.1) 		16.8
(1.1) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.5
(-2.4)
A 		13.1
(3)
A 		1.3
(-3)
A 		2
(-2.6)
A 		12
B 9
(0.4)
A 		2.5
(-3)
A 		4.3
(-2.1)
A 		14.1
(3)
A 		12
C 2.4
(-3)
A 		9.3
(3)
A 		2.4
(-3)
A 		4
(-1.6)
A 		7
avr 4.6
(-1) 		8.3
(3) 		2.7
(-3) 		6.7
(1.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.8
(-3)
A 		7.7
(3)
A 		2.8
(-1.3)
A 		0.8
(-3)
A 		2.3
(-1.7)
A 		7.4
(2.7)
A 		7
B 2.6
(-2.3)
A 		1.9
(-2.8)
A 		5.3
(-0)
A 		1.7
(-3)
A 		9
(3)
A 		5.1
(-0.2)
A 		7
C 3
(-1.7)
A 		12
(3)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		3.2
(-1.6)
A 		2.1
(-2.2)
A 		11
avr 2.1
(-2) 		7.2
(3) 		2.9
(-1.2) 		1.1
(-3) 		4.8
(0.6) 		4.9
(0.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180138_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14786
Sequence Type Exemplar sequence
Representative Public ID F36G9.13 NCBI
Target Description F36G9.13 /REP_DB=WormBase Gene ID /WP=CE15990 /TR=O45471 /GB=CAB04332.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074608(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074608 NCBI Caenorhabditis elegans F36G9.13 (F36G9.13) mRNA, complete cds. 11/11 None
SNAP00000043430 ENSEMBL cdna:SNAP chromosome:CEL140:V:15986251:15989223:1 11/11 None
F36G9.13 ENSEMBL cdna:known chromosome:CEL140:V:15985944:15989223:1 gene:F36G9.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043435 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15985943-15989223(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36G9.13
Entrez Gene 185376 Entrez gene
SwissProt O45471 EMBL-EBI
WormBase CE15990 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04332 Hypothetical protein F36G9.13 [Caenorhabditis elegans] ref|NP_507009.1| F36G9.13 [Caenorhabditis elegans] 0.0
blast AAC26299 Hypothetical protein Y57G7A.6 [Caenorhabditis elegans] ref|NP_493938.1| Y57G7A.6 [Caenorhabditis elegans] 0.0
blast CAB07557 Hypothetical protein C06C6.7 [Caenorhabditis elegans] ref|NP_507012.1| C06C6.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.4E-21
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.4E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507009.1 3 723-742,749-771,816-833
F36G9.13 3 723-742,749-771,816-833
SNAP00000043430 3 718-737,744-766,811-828
Sequence
Target Sequence 
>C. ELEGANS:180138_AT
gtctgtggatggtggcttcaagggcaaaaggattgctttacctgttattggaggtggaaa
tgtctcgacaactacagagtttgcaattgttgttgacactaatagtactcttgtgtgcac
tgttacggtattgattattggttccatcctgggaattatcgcctttttatggtgctggcg
tgatcagaattgcatctatcataagctcaggagacggtacgcgaagccaacctataacat
gcagactgctcgagaaccggaaccgaatactccgaaaccggctgcaagtcattctgaccc
ggaaccgagaggttttttcatcagtttatgtatttacttttcgttttttttcttcagatt
tgtggcgcgaagagaacaatctgcacagcattccgtgaaagtgccaccacctccaccacc
tcctgtaccgactgcgcctccagcaaagactccagaaactgcgcctcttcttgtcccaaa
gccagtttccaacgcggagaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGTGGATGGTGGCTTCAAGGGC 158 471 2148 Antisense
GTACTCTTGTGTGCACTGTTACGGT 466 457 2252 Antisense
TCCATCCTGGGAATTATCGCCTTTT 316 591 2290 Antisense
TCAGGAGACGGTACGCGAAGCCAAC 437 623 2354 Antisense
GAAGCCAACCTATAACATGCAGACT 411 345 2370 Antisense
TGCAGACTGCTCGAGAACCGGAACC 409 577 2387 Antisense
CCGAAACCGGCTGCAAGTCATTCTG 629 263 2419 Antisense
GTCATTCTGACCCGGAACCGAGAGG 644 465 2435 Antisense
GAACAATCTGCACAGCATTCCGTGA 475 351 2521 Antisense
CAAAGACTCCAGAAACTGCGCCTCT 684 191 2591 Antisense
AAAGCCAGTTTCCAACGCGGAGAAT 629 123 2625 Antisense
Sequence Source Affymetrix Proprietary Database