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[180136_at]

Description ZK488.6 /REP_DB=WormBase Gene ID /WP=CE15361 /TR=O17018 /GB=AAB69953.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 0      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 11.4
(-2.2)
A 		6
(-3)
A 		21.7
(-0.7)
A 		46.5
(3)
A 		41
B 29.3
(0.8)
A 		20.8
(-3)
A 		21.2
(-2.8)
A 		34.3
(3)
A 		14
C 5.2
(-2.6)
A 		2.5
(-3)
A 		27.3
(0.3)
A 		47.1
(3)
A 		45
avr 15.3
(-2) 		9.8
(-3) 		23.4
(-0.5) 		42.6
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 22.9
(1.8)
A 		20.3
(1.2)
A 		28.2
(3)
A 		11.1
(-0.8)
A 		20.9
(1.4)
A 		1.5
(-3)
A 		27
B 5.6
(-0.3)
A 		0.9
(-3)
A 		11.4
(3)
A 		7.5
(0.8)
A 		4.3
(-1.1)
A 		5.6
(-0.3)
A 		11
C 18.3
(1)
A 		4.3
(-2.5)
A 		25.8
(2.8)
A 		2.1
(-3)
A 		17.7
(0.8)
A 		26.5
(3)
A 		24
avr 15.6
(0.5) 		8.5
(-2.4) 		21.8
(3) 		6.9
(-3) 		14.3
(-0) 		11.2
(-1.3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.1
(0.1)
A 		1.3
(-3)
A 		5.7
(1.8)
A 		6.8
(3)
A 		6
B 9.3
(3)
A 		5.1
(-2.7)
A 		4.9
(-3)
A 		7.3
(0.3)
A 		4
C 1.7
(-2.3)
A 		0.7
(-3)
A 		9.5
(3)
A 		7.9
(1.9)
A 		9
avr 5
(0.2) 		2.4
(-3) 		6.7
(2.3) 		7.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.2
(0.4)
A 		7.2
(3)
A 		6.2
(2.1)
A 		2.8
(-0.9)
A 		6.3
(2.2)
A 		0.4
(-3)
A 		7
B 1.9
(0.8)
A 		0.3
(-3)
A 		2.8
(3)
A 		2
(1.1)
A 		1.8
(0.6)
A 		2.1
(1.3)
A 		3
C 6.8
(1.5)
A 		1.3
(-2.4)
A 		6.6
(1.4)
A 		0.4
(-3)
A 		5.7
(0.7)
A 		8.9
(3)
A 		9
avr 4.3
(1.5) 		2.9
(-0.9) 		5.2
(3) 		1.7
(-3) 		4.6
(2) 		3.8
(0.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180136_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15811
Sequence Type Exemplar sequence
Representative Public ID ZK488.6 NCBI
Target Description ZK488.6 /REP_DB=WormBase Gene ID /WP=CE15361 /TR=O17018 /GB=AAB69953.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070855(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070855 NCBI Caenorhabditis elegans ZK488.6 (ZK488.6) mRNA, complete cds. 11/11 None
SNAP00000016984 ENSEMBL cdna:SNAP chromosome:CEL140:V:591428:592292:1 11/11 None
GENEFINDER00000016993 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:590311:592915:1 10/11 None
ZK488.6 ENSEMBL cdna:known chromosome:CEL140:V:590311:592292:1 gene:ZK488.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:590310-592292(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK488.6
Entrez Gene 191331 Entrez gene
SwissProt O17018 EMBL-EBI
WormBase CE15361 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69953 Hypothetical protein ZK488.6 [Caenorhabditis elegans] ref|NP_503256.1| ZK488.6 [Caenorhabditis elegans] 0.0
blast AAB69952 Hypothetical protein ZK488.5 [Caenorhabditis elegans] ref|NP_503257.1| ZK488.5 [Caenorhabditis elegans] 0.0
blast AAB94265 Hypothetical protein C14C6.7 [Caenorhabditis elegans] ref|NP_503242.1| C14C6.7 [Caenorhabditis elegans] 0.0
blast AAB94265 Hypothetical protein C14C6.7 [Caenorhabditis elegans] ref|NP_503242.1| C14C6.7 [Caenorhabditis elegans] 1.0E-171
blast AAB69953 Hypothetical protein ZK488.6 [Caenorhabditis elegans] ref|NP_503256.1| ZK488.6 [Caenorhabditis elegans] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.7E-73
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016993 1 564-583
Sequence
Target Sequence 
>C. ELEGANS:180136_AT
gtcatcatcgtagcaagcacttctcgaaatggacggcactaatcgatattgatgagaggc
tggaaatgaagagtgacaaatttaaaacagtcgttgattatttggactcaattcaggatg
attcaatttcgagcctgcgttttcgggtaaaatgggttatgaagcacaactatacacctg
ccagatacgaaaatgaaacacagcttcaaagtgaaatgatcttccataaatatcaaaata
cttcccaactcggtcgtgaacgggatcagccgaaatgcattattcgtccggaaaatgttg
cgatgatgtcgattcacgggccaaaagatatgtataaaggtaaaaaaaagatcgtggtac
cagaagacactgggttcataaggcactatcgcaatgtggaaaataaaatttttgcacacg
gatataagaaaatgatgtcacatgctccgttcaacatttccccaattgatcatgatattg
ataaagatttatcgaaaaaaattatggaccgtgtaaagtggacttatgaaattgtgcaac
caacttgtgaacagaaagcgaaaatgtatagagtcgagtctaccagtcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCATCATCGTAGCAAGCACTTCTC 398 467 1013 Antisense
AATGGACGGCACTAATCGATATTGA 610 161 1040 Antisense
GGATGATTCAATTTCGAGCCTGCGT 420 513 1128 Antisense
GAGCCTGCGTTTTCGGGTAAAATGG 174 315 1143 Antisense
GAAGCACAACTATACACCTGCCAGA 479 341 1173 Antisense
TCAAAATACTTCCCAACTCGGTCGT 632 627 1245 Antisense
AACTCGGTCGTGAACGGGATCAGCC 109 141 1259 Antisense
TGCGATGATGTCGATTCACGGGCCA 330 583 1311 Antisense
AAGATCGTGGTACCAGAAGACACTG 415 155 1360 Antisense
GACACTGGGTTCATAAGGCACTATC 486 367 1378 Antisense
TATAGAGTCGAGTCTACCAGTCCTC 84 659 1579 Antisense
Sequence Source Affymetrix Proprietary Database