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[180134_at]

Description C54G6.2 /REP_DB=WormBase Gene ID /WP=CE17605 /TR=O44980 /GB=AAB97559.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 61      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 47.8
(3)
A 		15.2
(-3)
A 		45.3
(2.5)
A 		27.4
(-0.8)
A 		33
B 27.7
(-0.3)
A 		38.7
(3)
A 		37.1
(2.5)
A 		18.9
(-3)
A 		20
C 28.2
(-0.4)
A 		34.5
(3)
A 		26.7
(-1.2)
A 		23.4
(-3)
A 		11
avr 34.6
(2.2) 		29.5
(-0.1) 		36.4
(3) 		23.2
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 36.3
(-1.1)
A 		43.8
(-0.6)
A 		97.1
(3)
A 		23.7
(-2)
A 		27.2
(-1.7)
A 		8.8
(-3)
A 		88
B 33
(3)
A 		26.2
(0.4)
A 		22.7
(-1)
A 		25
(-0.1)
A 		24.3
(-0.4)
A 		17.5
(-3)
A 		16
C 26
(0.3)
A 		27.7
(1)
A 		32.7
(3)
A 		31.9
(2.7)
A 		20.8
(-1.8)
A 		17.9
(-3)
A 		15
avr 31.8
(-0.2) 		32.6
(-0) 		50.8
(3) 		26.9
(-1) 		24.1
(-1.4) 		14.7
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 17.4
(3)
A 		3.3
(-3)
A 		11.8
(0.6)
A 		4
(-2.7)
A 		14
B 8.8
(2.1)
A 		9.6
(3)
A 		8.6
(1.9)
A 		4
(-3)
A 		6
C 9.3
(2.4)
A 		9.9
(3)
A 		9.3
(2.4)
A 		3.9
(-3)
A 		6
avr 11.8
(3) 		7.6
(-0.2) 		9.9
(1.5) 		4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.7
(-1.6)
A 		15.6
(1.3)
A 		21.1
(3)
A 		6
(-1.8)
A 		8.2
(-1.1)
A 		2.2
(-3)
A 		19
B 11.5
(3)
A 		8.7
(0.2)
A 		5.5
(-3)
A 		6.6
(-1.9)
A 		9.9
(1.4)
A 		6.5
(-2)
A 		6
C 9.6
(3)
A 		8.5
(1.2)
A 		8.3
(0.8)
A 		6.4
(-2.3)
A 		6.7
(-1.8)
A 		6
(-3)
A 		4
avr 9.3
(0.9) 		10.9
(2.4) 		11.6
(3) 		6.3
(-1.7) 		8.3
(0) 		4.9
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180134_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20
Sequence Type Exemplar sequence
Representative Public ID C54G6.2 NCBI
Target Description C54G6.2 /REP_DB=WormBase Gene ID /WP=CE17605 /TR=O44980 /GB=AAB97559.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058404 NCBI Caenorhabditis elegans C54G6.2 (C54G6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000006759 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:996022:1010767:1 11/11 None
SNAP00000006755 ENSEMBL cdna:SNAP chromosome:CEL140:I:1001130:1014817:1 11/11 None
C54G6.2 ENSEMBL cdna:known chromosome:CEL140:I:1003891:1010767:1 gene:C54G6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1003262-1010767(+) 97.93 100.0
Public Domain and Genome References
Gene Title
Ensembl C54G6.2
Entrez Gene 183814 Entrez gene
SwissProt O44980 EMBL-EBI
WormBase CE36636 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB97559 Hypothetical protein C54G6.2 [Caenorhabditis elegans] ref|NP_490805.3| C54G6.2 [Caenorhabditis elegans] 0.0
blast CAE74549 Hypothetical protein CBG22109 [Caenorhabditis briggsae] 0.0
blast CAE74380 Hypothetical protein CBG22108 [Caenorhabditis briggsae] 3.0E-63
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000006759 5 21-38,43-65,123-145,193-215,227-249
SNAP00000006755 2 19-41,53-75
Sequence
Target Sequence 
>C. ELEGANS:180134_AT
aaaccgtattcctcgacagacttatgtacacaaaatggatagttcttggcgcagtacgcg
gcattgtaattgttaaaaattgtcaatcgacccgaatttcggtgagctgcgaccagctga
ttgtgctcgattcgaaaaatatcgaaatctacgccatgtcgccgaagaaaccaataattt
tcaacagctctgcggtaacttttgccccatttaacacgatttacgagggtcaaatggagt
ttttggaagagaatgggcatgggcttgagcacaatttggtgttaaaggagccgataaatt
ttggagatggctcgtggaaattgatggaaacttcgagatttgtgtgtcagcacactccac
ttcacaccagtgataagcaatttgagatgctcctcaactccctaccagaagaatatcgtg
tggctcaccaccgaaatgcccaggacgctcaaaaaatgatctccttggacccggaaaagt
gc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCGTATTCCTCGACAGACTTAT 181 119 1772 Antisense
ATGGATAGTTCTTGGCGCAGTACGC 11 53 1806 Antisense
CGAATTTCGGTGAGCTGCGACCAGC 131 253 1864 Antisense
ATATCGAAATCTACGCCATGTCGCC 252 21 1910 Antisense
CAACAGCTCTGCGGTAACTTTTGCC 433 189 1953 Antisense
TAACTTTTGCCCCATTTAACACGAT 29 639 1967 Antisense
TTGTGTGTCAGCACACTCCACTTCA 218 707 2111 Antisense
CCTCAACTCCCTACCAGAAGAATAT 250 269 2163 Antisense
GAAGAATATCGTGTGGCTCACCACC 332 341 2179 Antisense
CCGAAATGCCCAGGACGCTCAAAAA 55 263 2202 Antisense
GATCTCCTTGGACCCGGAAAAGTGC 636 417 2229 Antisense
Sequence Source Affymetrix Proprietary Database