[Home] | [Total List]

[180133_at]

Description C54G6.3 /REP_DB=WormBase Gene ID /WP=CE17606 /TR=O44981 /GB=AAB97561.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 21      6grp_total > 60      4grp_total > 26      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 52.8
(-3)
A 		73.9
(0.8)
A 		77.5
(1.5)
P 		85.8
(3)
M 		33
B 55.1
(-1)
P 		103.7
(3)
A 		30.9
(-3)
A 		62.6
(-0.4)
A 		73
C 46.9
(-3)
P 		50
(-2.8)
A 		51.3
(-2.7)
P 		144.4
(3)
P 		98
avr 51.6
(-3) 		75.9
(0.2) 		53.2
(-2.8) 		97.6
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 73.6
(3)
A 		32.7
(-3)
A 		37
(-2.4)
A 		67.2
(2.1)
P 		42.2
(-1.6)
A 		47.7
(-0.8)
P 		41
B 69.7
(0.6)
P 		42.2
(-3)
A 		73.9
(1.1)
P 		88.1
(3)
A 		68.6
(0.5)
P 		42.4
(-3)
P 		46
C 34.5
(-3)
A 		67.1
(0.9)
P 		84.7
(3)
P 		57.4
(-0.3)
A 		40.5
(-2.3)
M 		39.5
(-2.4)
A 		50
avr 59.3
(0.5) 		47.3
(-2.1) 		65.2
(1.8) 		70.9
(3) 		50.4
(-1.4) 		43.2
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.2
(2.1)
A 		16
(-0.4)
A 		20.3
(3)
P 		12.6
(-3)
M 		8
B 17.6
(0.4)
P 		25.6
(3)
A 		7.2
(-3)
A 		13.3
(-1)
A 		18
C 15.5
(-2.3)
P 		14.4
(-3)
A 		17.9
(-0.9)
P 		24.3
(3)
P 		10
avr 17.4
(0.8) 		18.7
(3) 		15.1
(-3) 		16.7
(-0.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 13.6
(0.7)
A 		11.6
(-0.6)
A 		8
(-3)
A 		17.1
(3)
P 		12.7
(0.1)
A 		11.6
(-0.6)
P 		9
B 24.3
(1.4)
P 		14
(-3)
A 		17.9
(-1.3)
P 		23.3
(1)
A 		27.9
(3)
P 		15.8
(-2.2)
P 		14
C 12.8
(-2.2)
A 		20.5
(2.4)
P 		21.5
(3)
P 		11.5
(-3)
A 		13.1
(-2)
M 		13.2
(-2)
A 		10
avr 16.9
(1.6) 		15.4
(-0.4) 		15.8
(0.1) 		17.3
(2.2) 		17.9
(3) 		13.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180133_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16
Sequence Type Exemplar sequence
Representative Public ID C54G6.3 NCBI
Target Description C54G6.3 /REP_DB=WormBase Gene ID /WP=CE17606 /TR=O44981 /GB=AAB97561.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058403(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058403 NCBI Caenorhabditis elegans C54G6.3 (C54G6.3) mRNA, complete cds. 9/11 None
GENEFINDER00000006759 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:996022:1010767:1 11/11 None
C54G6.3 ENSEMBL cdna:known chromosome:CEL140:I:996047:997110:1 gene:C54G6.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:996046-997428(+) 85.63 85.63
Public Domain and Genome References
Gene Title
Ensembl C54G6.3
Entrez Gene 183815 Entrez gene
SwissProt O44981 EMBL-EBI
WormBase CE36637 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB97559 Hypothetical protein C54G6.2 [Caenorhabditis elegans] ref|NP_490805.3| C54G6.2 [Caenorhabditis elegans] 0.0
blast CAE74549 Hypothetical protein CBG22109 [Caenorhabditis briggsae] 0.0
blast CAE74380 Hypothetical protein CBG22108 [Caenorhabditis briggsae] 3.0E-63
blast AAB97561 Hypothetical protein C54G6.3 [Caenorhabditis elegans] ref|NP_490804.2| C54G6.3 [Caenorhabditis elegans] 6.0E-53
blast CAE74380 Hypothetical protein CBG22108 [Caenorhabditis briggsae] 3.0E-50
blast AAY44000 Hypothetical protein K04C2.7 [Caenorhabditis elegans] ref|NP_001022659.1| K04C2.7 [Caenorhabditis elegans] 5.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490804.2 1 19-41
C54G6.3 1 19-41
GENEFINDER00000006759 5 21-38,43-65,123-145,193-215,227-249
Sequence
Target Sequence 
>C. ELEGANS:180133_AT
tggcgttgctcaaagtgcgcgacgaatgcaccaagttggtcggttatcaatttctaaact
cgcacatttgtctctgcatatcactcatccaacttctcgtctgctgctgggccgttgctc
agcacgtcaactcctacatgacgcacagtaagatcttaaaatgtgattttctggagggga
gcctcccgctggaggccgtggacgctgtaattttcgatatccgacttttccattacctat
ggggcattcgaggatgtgtggcagagtatttggatggtggcttcgggcgacttttgtggt
gcgtttcccactgcttaaccctggttttctccattccggtcaccttcatctcccatccga
aaccctgtctcttttggccgctgctttttcaggtgagttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCGTTGCTCAAAGTGCGCGACGA 691 543 14 Antisense
GCGCGACGAATGCACCAAGTTGGTC 205 283 30 Antisense
ATTTCTAAACTCGCACATTTGTCTC 384 15 63 Antisense
CATTTGTCTCTGCATATCACTCATC 159 215 78 Antisense
TCAACTCCTACATGACGCACAGTAA 386 629 140 Antisense
ATTTTCTGGAGGGGAGCCTCCCGCT 124 13 179 Antisense
GGCCGTGGACGCTGTAATTTTCGAT 591 385 207 Antisense
TTCGATATCCGACTTTTCCATTACC 71 695 226 Antisense
GGGGCATTCGAGGATGTGTGGCAGA 205 499 254 Antisense
CGACTTTTGTGGTGCGTTTCCCACT 443 249 301 Antisense
GCCGCTGCTTTTTCAGGTGAGTTGG 690 285 390 Antisense
Sequence Source Affymetrix Proprietary Database