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[180132_at]

Description ZK1073.2 /REP_DB=WormBase Gene ID /WP=CE24713 /TR=Q23393 /GB=CAA92228.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 27      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 80      6grp_total > 17      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 380.3
(3)
P 		233.2
(-1.8)
P 		196
(-3)
P 		373.1
(2.8)
P 		184
B 381.8
(3)
P 		215.1
(-1.2)
P 		142.7
(-3)
P 		308.6
(1.2)
P 		239
C 382.5
(3)
P 		204.8
(-3)
P 		205.1
(-3)
P 		305.5
(0.4)
P 		178
avr 381.5
(3) 		217.7
(-1.9) 		181.3
(-3) 		329.1
(1.4) 		200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 342.1
(3)
P 		279.1
(0.6)
P 		210
(-2.1)
P 		185.2
(-3)
P 		187.7
(-2.9)
P 		221.5
(-1.6)
P 		157
B 338.2
(3)
P 		219.5
(-1.8)
P 		191.3
(-3)
P 		261.7
(-0.1)
P 		221.3
(-1.8)
P 		230.1
(-1.4)
P 		147
C 380
(3)
P 		274.6
(-0.7)
P 		244.2
(-1.7)
P 		229.6
(-2.2)
P 		207.7
(-3)
P 		256.2
(-1.3)
P 		172
avr 353.4
(3) 		257.7
(-0.9) 		215.2
(-2.6) 		225.5
(-2.2) 		205.6
(-3) 		235.9
(-1.8) 		148
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 138.5
(3)
P 		50.6
(-3)
P 		51.2
(-3)
P 		54.6
(-2.7)
P 		88
B 121.7
(3)
P 		53.1
(-1.6)
P 		33.1
(-3)
P 		65.8
(-0.8)
P 		89
C 126.6
(3)
P 		58.9
(-2.4)
P 		71.5
(-1.4)
P 		51.5
(-3)
P 		75
avr 128.9
(3) 		54.2
(-2.8) 		51.9
(-3) 		57.3
(-2.6) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 63.1
(-1)
P 		99.2
(3)
P 		45.7
(-3)
P 		47
(-2.9)
P 		56.6
(-1.8)
P 		53.9
(-2.1)
P 		54
B 117.7
(3)
P 		73.1
(-0.8)
P 		46.5
(-3)
P 		69.3
(-1.1)
P 		89.9
(0.7)
P 		85.8
(0.3)
P 		71
C 140.8
(3)
P 		83.8
(-0.6)
P 		62.1
(-2)
P 		46.2
(-3)
P 		67.2
(-1.7)
P 		85.8
(-0.5)
P 		95
avr 107.2
(3) 		85.4
(0.7) 		51.4
(-3) 		54.2
(-2.7) 		71.2
(-0.9) 		75.2
(-0.4) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180132_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17366
Sequence Type Exemplar sequence
Representative Public ID ZK1073.2 NCBI
Target Description ZK1073.2 /REP_DB=WormBase Gene ID /WP=CE24713 /TR=Q23393 /GB=CAA92228.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078232 NCBI Caenorhabditis elegans ZK1073.2 (ZK1073.2) mRNA, complete cds. 11/11 None
ZK1073.2 ENSEMBL cdna:known chromosome:CEL140:X:16103557:16123665:1 gene:ZK1073.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005937 3/11 Cross Hyb Matching Probes None
SNAP00000005934 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16120135-16123665(+) 98.12 98.12
Public Domain and Genome References
Gene Title
Ensembl ZK1073.2
Entrez Gene 181688 Entrez gene
SwissProt Q23393 EMBL-EBI
WormBase CE24713 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92228 Hypothetical protein ZK1073.2 [Caenorhabditis elegans] ref|NP_510633.1| ZK1073.2 [Caenorhabditis elegans] 1.0E-73
blast CAE69994 Hypothetical protein CBG16398 [Caenorhabditis briggsae] 2.0E-70
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510633.1 4 41-63,73-95,107-129,149-171
ZK1073.2 4 41-63,73-95,107-129,149-171
Sequence
Target Sequence 
>C. ELEGANS:180132_AT
tgaatgtcagtcaatgccctgcgtgcctaaacctcaacaacggtcgccaaatgcttcctt
caacccggcgcacgctcagtatgcgtgctgttttcaacagttacactcgaatacgggcgc
cattctcatcgccgtgttccacatcatcctgtgcagcggtatattcacgtggcttgtgaa
gtgcattgccaccgaaaaatcaaggatcgagcttgccgctgaaatttttctcgcctcatt
atgccttattgctgccattattttattgcttggattgaaactcgaaagtcgcagactact
cactggttatgttcttgctcagacacttctcgttggccttctctttgtattatttctcgc
acttataatgggcattaagcccggaattctcgacgacccggatcaaaacggatacaattc
tctagaagaggaacttctgatagttttggaaattttcatctcgctcgccgtggtaatcat
tgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATGTCAGTCAATGCCCTGCGTG 229 575 24 Antisense
TCAACAACGGTCGCCAAATGCTTCC 707 629 57 Antisense
AGTTACACTCGAATACGGGCGCCAT 657 61 122 Antisense
TCCACATCATCCTGTGCAGCGGTAT 97 589 161 Antisense
GCTTGCCGCTGAAATTTTTCTCGCC 117 307 234 Antisense
GCCTCATTATGCCTTATTGCTGCCA 509 281 256 Antisense
GACTACTCACTGGTTATGTTCTTGC 568 373 317 Antisense
TTATGTTCTTGCTCAGACACTTCTC 19 681 330 Antisense
ATTCTCGACGACCCGGATCAAAACG 429 9 409 Antisense
TTTGGAAATTTTCATCTCGCTCGCC 593 665 468 Antisense
CTCGCTCGCCGTGGTAATCATTGAA 560 233 483 Antisense
Sequence Source Affymetrix Proprietary Database