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[180131_at]

Description Y54E5A.2 /REP_DB=WormBase Gene ID /WP=CE20313 /TR=Q9XWK0 /GB=CAA21660.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 34      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 15.6
(-2.4)
A 		71.5
(3)
A 		8.9
(-3)
A 		55.5
(1.5)
A 		63
B 36
(0.1)
A 		25.9
(-1.4)
A 		56.6
(3)
A 		14.4
(-3)
A 		42
C 11.4
(-3)
A 		68.6
(1.9)
A 		41.5
(-0.4)
A 		81.2
(3)
A 		70
avr 21
(-3) 		55.3
(3) 		35.7
(-0.4) 		50.4
(2.1) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 63.9
(2.5)
A 		34.1
(-0.9)
A 		16.4
(-3)
A 		67.8
(3)
A 		61.2
(2.2)
A 		39.9
(-0.3)
A 		51
B 35.4
(0.8)
A 		31.7
(-0.4)
A 		25.2
(-2.5)
A 		23.7
(-3)
A 		33.2
(0)
A 		42.4
(3)
A 		19
C 32.9
(-0.7)
A 		41.3
(1.5)
A 		47.1
(3)
A 		30.8
(-1.3)
A 		24.1
(-3)
A 		35.8
(0.1)
A 		23
avr 44.1
(3) 		35.7
(-0.5) 		29.6
(-3) 		40.8
(1.6) 		39.5
(1.1) 		39.4
(1.1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.7
(-1.5)
A 		15.5
(3)
A 		2.3
(-3)
A 		8.1
(-0.4)
A 		13
B 11.5
(2)
A 		6.4
(-1)
A 		13.1
(3)
A 		3.1
(-3)
A 		10
C 3.8
(-3)
A 		19.7
(3)
A 		14.5
(1)
A 		13.7
(0.7)
A 		16
avr 7
(-3) 		13.9
(3) 		10
(-0.4) 		8.3
(-1.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 11.8
(0.3)
A 		12.1
(0.4)
A 		3.6
(-3)
A 		17.2
(2.5)
A 		18.5
(3)
A 		9.7
(-0.5)
A 		15
B 12.3
(0.8)
A 		10.5
(-0.3)
A 		6.1
(-3)
A 		6.3
(-2.9)
A 		13.5
(1.6)
A 		15.8
(3)
A 		10
C 12.2
(2.6)
A 		12.6
(3)
A 		12
(2.4)
A 		6.2
(-3)
A 		7.8
(-1.5)
A 		12
(2.4)
A 		6
avr 12.1
(1.8) 		11.7
(1.4) 		7.2
(-3) 		9.9
(-0.3) 		13.3
(3) 		12.5
(2.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180131_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.924
Sequence Type Exemplar sequence
Representative Public ID Y54E5A.2 NCBI
Target Description Y54E5A.2 /REP_DB=WormBase Gene ID /WP=CE20313 /TR=Q9XWK0 /GB=CAA21660.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061149(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061149 NCBI Caenorhabditis elegans Y54E5A.2 (Y54E5A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000041551 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14702288:14708418:1 11/11 None
Y54E5A.2 ENSEMBL cdna:known chromosome:CEL140:I:14702288:14703687:1 gene:Y54E5A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14702218-14703618(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E5A.2
Entrez Gene 173328 Entrez gene
SwissProt Q9XWK0 EMBL-EBI
WormBase CE20313 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21661 Hypothetical protein Y54E5A.3 [Caenorhabditis elegans] ref|NP_493551.1| Y54E5A.3 [Caenorhabditis elegans] 1.0E-180
blast CAA21660 Hypothetical protein Y54E5A.2 [Caenorhabditis elegans] ref|NP_493550.1| Y54E5A.2 [Caenorhabditis elegans] 1.0E-115
blast CAA21660 Hypothetical protein Y54E5A.2 [Caenorhabditis elegans] ref|NP_493550.1| Y54E5A.2 [Caenorhabditis elegans] 1.0E-111
blast CAE64140 Hypothetical protein CBG08756 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041551 1 628-650
Sequence
Target Sequence 
>C. ELEGANS:180131_AT
aaagacgagcggaactctactccctgtactcctcaattccattatcaaaagacacgtgga
gatttgagaattacctgaacgttcacaagtacaacaatatactattcgacggaaaaatct
tggaattcgactcactgggatggttaaatgggaatcagacgatttatcacaaattaccat
attttatatcgaatccggcgtttcgaattcctcatatatcaaaggaattgtgtgattcta
acgggttctttaatattggatttcgcatttttcagaaaactcgcgaagcgggcctcccgt
accaaccgcaatgtgccacgtgtcatccgataattgaaggtctccatcaaatgtactacg
tattcccggaacgtgatttcactcagattttcacgaaattgacgatcggctctcgaaaaa
tcaataatttattgcactattgtagtcgggaggattgtgaacaggagccacgtgtctcga
att

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGACGAGCGGAACTCTACTCCCT 557 123 83 Antisense
TGTACTCCTCAATTCCATTATCAAA 628 559 107 Antisense
GGAATTCGACTCACTGGGATGGTTA 691 533 204 Antisense
CCGGCGTTTCGAATTCCTCATATAT 347 265 277 Antisense
ATTGTGTGATTCTAACGGGTTCTTT 703 1 309 Antisense
CAGAAAACTCGCGAAGCGGGCCTCC 95 205 355 Antisense
TGCCACGTGTCATCCGATAATTGAA 312 587 396 Antisense
GAAGGTCTCCATCAAATGTACTACG 156 335 418 Antisense
GTATTCCCGGAACGTGATTTCACTC 148 453 442 Antisense
ACGAAATTGACGATCGGCTCTCGAA 70 93 475 Antisense
GAACAGGAGCCACGTGTCTCGAATT 247 351 541 Antisense
Sequence Source Affymetrix Proprietary Database