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[180130_at]

Description B0334.10 /REP_DB=WormBase Gene ID /WP=CE19660 /TR=Q9XVW7 /GB=CAA91379.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 3.4
(-3)
A 		6.6
(1.3)
A 		5.9
(0.3)
A 		7.9
(3)
A 		5
B 4.4
(-2.5)
A 		4.7
(-2.4)
A 		23.5
(3)
A 		2.7
(-3)
A 		21
C 7.1
(0.4)
A 		7.1
(0.4)
A 		3.1
(-3)
A 		10.2
(3)
A 		7
avr 5
(-3) 		6.1
(-1.9) 		10.8
(3) 		6.9
(-1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 5.9
(-0)
A 		7
(1)
A 		5.6
(-0.3)
A 		9
(3)
A 		2.9
(-3)
A 		3.3
(-2.6)
A 		6
B 4.5
(-0.7)
A 		4.2
(-0.9)
A 		9.8
(3)
A 		2.5
(-2.1)
A 		1.2
(-3)
A 		1.8
(-2.6)
A 		9
C 1.4
(-3)
A 		3.9
(2.6)
A 		2.9
(0.3)
A 		4
(2.8)
A 		4.1
(3)
A 		2.2
(-1.2)
A 		3
avr 3.9
(-0.6) 		5
(1.2) 		6.1
(3) 		5.2
(1.5) 		2.7
(-2.5) 		2.4
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.3
(-1)
A 		1.4
(1)
A 		1.5
(3)
A 		1.2
(-3)
A 		0
B 1.4
(-2)
A 		1.2
(-2.3)
A 		5.4
(3)
A 		0.6
(-3)
A 		5
C 2.4
(3)
A 		2.1
(1.6)
A 		1.1
(-3)
A 		1.7
(-0.2)
A 		1
avr 1.7
(-1) 		1.6
(-1.4) 		2.7
(3) 		1.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.1
(-1.9)
A 		2.5
(3)
A 		1.2
(-1.6)
A 		2.3
(2.3)
A 		0.9
(-2.6)
A 		0.8
(-3)
A 		2
B 1.6
(0.5)
A 		1.4
(-0.2)
A 		2.4
(3)
A 		0.7
(-2.4)
A 		0.5
(-3)
A 		0.7
(-2.4)
A 		2
C 0.5
(-3)
A 		1.2
(2.3)
A 		0.7
(-1.5)
A 		0.8
(-0.8)
A 		1.3
(3)
A 		0.7
(-1.5)
A 		1
avr 1.1
(-0.6) 		1.7
(3) 		1.4
(1.2) 		1.3
(0.6) 		0.9
(-1.8) 		0.7
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180130_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3643
Sequence Type Exemplar sequence
Representative Public ID B0334.10 NCBI
Target Description B0334.10 /REP_DB=WormBase Gene ID /WP=CE19660 /TR=Q9XVW7 /GB=CAA91379.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064060(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064060 NCBI Caenorhabditis elegans B0334.10 (B0334.10) mRNA, complete cds. 11/11 None
SNAP00000019021 ENSEMBL cdna:SNAP chromosome:CEL140:II:11518393:11518764:1 10/11 None
GENEFINDER00000019027 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11518393:11518764:1 10/11 None
B0334.10 ENSEMBL cdna:known chromosome:CEL140:II:11518393:11519476:1 gene:B0334.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11518389-11519473(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0334.10
Entrez Gene 181930 Entrez gene
SwissProt Q9XVW7 EMBL-EBI
WormBase CE19660 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91379 Hypothetical protein B0334.10 [Caenorhabditis elegans] ref|NP_496461.1| B0334.10 [Caenorhabditis elegans] 1.0E-100
blast CAA91379 Hypothetical protein B0334.10 [Caenorhabditis elegans] ref|NP_496461.1| B0334.10 [Caenorhabditis elegans] 4.0E-63
blast AAB88354 Hypothetical protein B0273.1 [Caenorhabditis elegans] ref|NP_500821.1| B0273.1 [Caenorhabditis elegans] 9.0E-59
blast AAB88354 Hypothetical protein B0273.1 [Caenorhabditis elegans] ref|NP_500821.1| B0273.1 [Caenorhabditis elegans] 4.0E-58
blast CAE59484 Hypothetical protein CBG02869 [Caenorhabditis briggsae] 1.0E-50
Sequence
Target Sequence 
>C. ELEGANS:180130_AT
gaaacacctcgatttacgacgtggcagtgaagattgtgaatccgaacgaaagcccaaagc
ttgagcgttacgaatgcctggttctatccaataagtacacggaagtcgcaatccttgaaa
caccgtccaaagccgctctgctcaggaacaagccggtcgagatctacgctagggccatct
acccgtacaatcgcaaaaacattcgccattggattgaaggacacgtgtcggacaagccac
atcatctcgtccagtcgctcaattttgtcgccgacaatgcagagtattcggcgaaaacgc
caagaaatcatggaaagtctagagttgggtcatttccgttgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACACCTCGATTTACGACGTGGC 419 355 71 Antisense
GAATCCGAACGAAAGCCCAAAGCTT 108 329 108 Antisense
TTGAGCGTTACGAATGCCTGGTTCT 451 705 131 Antisense
TAAGTACACGGAAGTCGCAATCCTT 488 637 162 Antisense
CCGCTCTGCTCAGGAACAAGCCGGT 90 263 203 Antisense
AGGAACAAGCCGGTCGAGATCTACG 618 53 214 Antisense
CCATCTACCCGTACAATCGCAAAAA 260 269 245 Antisense
GACACGTGTCGGACAAGCCACATCA 661 367 290 Antisense
TCCAGTCGCTCAATTTTGTCGCCGA 656 589 320 Antisense
TTGTCGCCGACAATGCAGAGTATTC 213 705 335 Antisense
AGAGTTGGGTCATTTCCGTTGTTCA 241 69 391 Antisense
Sequence Source Affymetrix Proprietary Database