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[180128_at]

Description Y51H4A.8 /REP_DB=WormBase Gene ID /WP=CE22335 /TR=Q9NAE1 /GB=CAB61142.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 20      6grp_total > 14      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 631
1 2 3 4 range
A 1022
(3)
P 		611.5
(-2.6)
P 		582.5
(-3)
P 		716.8
(-1.2)
P 		440
B 1117.4
(3)
P 		803.8
(-1.6)
P 		707
(-3)
P 		739.5
(-2.5)
P 		410
C 1169.2
(3)
P 		940.2
(0.8)
P 		603.3
(-2.4)
P 		538.3
(-3)
P 		631
avr 1102.9
(3) 		785.2
(-1) 		630.9
(-3) 		664.9
(-2.6) 		472

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1479
1 2 3 4 5 6 range
A 1446
(3)
P 		1288.4
(2)
P 		1381.3
(2.6)
P 		856.5
(-0.8)
P 		620.1
(-2.3)
P 		505.8
(-3)
P 		940
B 1913.7
(3)
P 		1277.4
(0.4)
P 		865.4
(-1.3)
P 		873.5
(-1.2)
P 		695.2
(-2)
P 		439.5
(-3)
P 		1474
C 1555.6
(3)
P 		1350.2
(1.9)
P 		814.5
(-1)
P 		791.7
(-1.1)
P 		435.1
(-3)
P 		530.8
(-2.5)
P 		1121
avr 1638.4
(3) 		1305.3
(1.3) 		1020.4
(-0.2) 		840.6
(-1.2) 		583.5
(-2.5) 		492
(-3) 		1146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 372.1
(3)
P 		132.7
(-2.4)
P 		152.3
(-1.9)
P 		104.9
(-3)
P 		267
B 356.3
(3)
P 		198.5
(-1.8)
P 		163.8
(-2.8)
P 		157.6
(-3)
P 		199
C 387
(3)
P 		270.3
(0.6)
P 		210.3
(-0.6)
P 		90.8
(-3)
P 		296
avr 371.8
(3) 		200.5
(-1) 		175.5
(-1.6) 		117.8
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 543
1 2 3 4 5 6 range
A 266.6
(-0.4)
P 		458.2
(3)
P 		300.8
(0.2)
P 		217.2
(-1.3)
P 		187.1
(-1.9)
P 		123.1
(-3)
P 		335
B 665.9
(3)
P 		425.2
(0.1)
P 		210.1
(-2.4)
P 		231.4
(-2.2)
P 		282.4
(-1.6)
P 		163.9
(-3)
P 		502
C 576.6
(3)
P 		412
(0.7)
P 		207.3
(-2.1)
P 		159.2
(-2.7)
P 		140.8
(-3)
P 		177.7
(-2.5)
P 		436
avr 503
(3) 		431.8
(1.8) 		239.4
(-1.5) 		202.6
(-2.2) 		203.4
(-2.2) 		154.9
(-3) 		348
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180128_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8919
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.8 NCBI
Target Description Y51H4A.8 /REP_DB=WormBase Gene ID /WP=CE22335 /TR=Q9NAE1 /GB=CAB61142.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070564(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070564 NCBI Caenorhabditis elegans Y51H4A.8 (Y51H4A.8) mRNA, complete cds. 10/11 A 
SNAP00000000183 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16575108:16576900:-1 9/11 None
GENEFINDER00000000219 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16575108:16578475:-1 11/11 None
Y51H4A.8 ENSEMBL cdna:known chromosome:CEL140:IV:16575089:16578504:-1 gene:Y51H4A.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16575113-16578481(-) 37.73 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H4A.8
Entrez Gene 190148 Entrez gene
SwissProt Q9NAE1 EMBL-EBI
WormBase CE36242 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T19600 probable transposition protein C31A11.2 - Caenorhabditis elegans 0.0
blast T19555 hypothetical protein C29E6.6 - Caenorhabditis elegans 0.0
blast T20782 hypothetical protein F11D11.9 - Caenorhabditis elegans 0.0
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 0.0
blast T18779 transposase containing protein - Caenorhabditis elegans 0.0
blast T32726 hypothetical protein C45H4.5 - Caenorhabditis elegans 0.0
blast CAB61142 Hypothetical protein Y51H4A.8 [Caenorhabditis elegans] ref|NP_502965.2| Y51H4A.8 [Caenorhabditis elegans] 1.0E-102
blast CAE62517 Hypothetical protein CBG06622 [Caenorhabditis briggsae] 8.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Sequence
Target Sequence 
>C. ELEGANS:180128_AT
gtttgtcgatcttttgaattcttttttaaagataaataagtctgaaacattaagtttcaa
aataagccacaaaatcaacgacgtattgcaagccaacagtatccccctaaacgacataaa
cccaccagtcatcacattctcgcctccaaacgtcacacttactacagtaaccgagtgcac
cgccgacaccgcgggttacggtgttctacaacaatccacagtctactataagtgtgcagc
gaaggctggaaccgatggaaaatacgcgaaaagtccgtttgttgtccctttgaccgttca
agtgaccgcgatttctgcaatttatgagagccagtggaagatgttggcttctcagatggc
ggacaagttgacgacgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGTCGATCTTTTGAATTCTTTT 568 451 1317 Antisense
CGTATTGCAAGCCAACAGTATCCCC 573 247 1398 Antisense
AACGACATAAACCCACCAGTCATCA 374 143 1426 Antisense
CTCCAAACGTCACACTTACTACAGT 92 233 1460 Antisense
TACTACAGTAACCGAGTGCACCGCC 474 641 1476 Antisense
GTTCTACAACAATCCACAGTCTACT 88 439 1519 Antisense
GCAGCGAAGGCTGGAACCGATGGAA 183 311 1552 Antisense
TTGTCCCTTTGACCGTTCAAGTGAC 253 649 1598 Antisense
GTTCAAGTGACCGCGATTTCTGCAA 255 445 1612 Antisense
ATGTTGGCTTCTCAGATGGCGGACA 338 47 1657 Antisense
GATGGCGGACAAGTTGACGACGAAG 141 407 1671 Antisense
Sequence Source Affymetrix Proprietary Database