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[180127_at]

Description C06A8.2 /REP_DB=WormBase Gene ID /WP=CE02453 /TR=Q17694 /GB=AAA81049.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 93      6grp_total > 76      4grp_total > 63      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 254.6
(-3)
P 		267.2
(-1.7)
P 		310.6
(3)
P 		273.6
(-1)
P 		56
B 353.1
(3)
P 		269.9
(-3)
P 		331.4
(1.4)
P 		290.1
(-1.5)
P 		83
C 395.4
(3)
P 		245.1
(-3)
P 		308.9
(-0.5)
P 		306.2
(-0.6)
P 		150
avr 334.4
(3) 		260.7
(-3) 		317
(1.6) 		290
(-0.6) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 449
1 2 3 4 5 6 range
A 219.6
(-3)
P 		275.6
(-2.2)
P 		325
(-1.4)
P 		395.9
(-0.4)
P 		326
(-1.4)
P 		621.2
(3)
P 		402
B 306.2
(-2.4)
P 		303.7
(-2.5)
P 		330.7
(-2)
P 		275.1
(-3)
P 		340.4
(-1.8)
P 		596.7
(3)
P 		322
C 267.9
(-2.8)
P 		250.6
(-3)
P 		390.1
(-1)
P 		338.7
(-1.7)
P 		348.2
(-1.6)
P 		668.5
(3)
P 		418
avr 264.6
(-3) 		276.6
(-2.8) 		348.6
(-1.6) 		336.6
(-1.8) 		338.2
(-1.8) 		628.8
(3) 		364
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 92.7
(3)
P 		58
(-1)
P 		81.2
(1.7)
P 		40
(-3)
P 		53
B 112.6
(3)
P 		66.7
(-2.4)
P 		76.8
(-1.2)
P 		61.8
(-3)
P 		51
C 130.9
(3)
P 		70.5
(-1.6)
P 		107.6
(1.2)
P 		51.6
(-3)
P 		79
avr 112.1
(3) 		65.1
(-1.6) 		88.5
(0.7) 		51.1
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 40.5
(-3)
P 		98
(0.1)
P 		70.8
(-1.4)
P 		100.4
(0.2)
P 		98.4
(0.1)
P 		151.2
(3)
P 		111
B 106.5
(-1.7)
P 		101.1
(-1.9)
P 		80.3
(-2.7)
P 		72.9
(-3)
P 		138.3
(-0.4)
P 		222.5
(3)
P 		150
C 99.3
(-1.8)
P 		76.5
(-2.7)
P 		99.3
(-1.8)
P 		68.1
(-3)
P 		112.7
(-1.3)
P 		223.8
(3)
P 		156
avr 82.1
(-2.9) 		91.9
(-2.4) 		83.5
(-2.8) 		80.5
(-3) 		116.5
(-1.2) 		199.2
(3) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180127_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5061
Sequence Type Exemplar sequence
Representative Public ID C06A8.2 NCBI
Target Description C06A8.2 /REP_DB=WormBase Gene ID /WP=CE02453 /TR=Q17694 /GB=AAA81049.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063235(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063235 NCBI Caenorhabditis elegans C06A8.2 (C06A8.2) mRNA, complete cds. 11/11 None
SNAP00000042210 ENSEMBL cdna:SNAP chromosome:CEL140:II:7779317:7781130:-1 11/11 None
GENEFINDER00000042217 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7779317:7781130:-1 11/11 None
C06A8.2 ENSEMBL cdna:known chromosome:CEL140:II:7779286:7781175:-1 gene:C06A8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7779313-7781127(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06A8.2
Entrez Gene 174255 Entrez gene
SwissProt Q17694 EMBL-EBI
WormBase CE31292 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81049 Hypothetical protein C06A8.2 [Caenorhabditis elegans] ref|NP_495636.2| C06A8.2 [Caenorhabditis elegans] 0.0
blast CAE67458 Hypothetical protein CBG12959 [Caenorhabditis briggsae] 1.0E-126
blast CAB54425 Hypothetical protein Y39E4B.2 [Caenorhabditis elegans] ref|NP_499719.1| Y39E4B.2 [Caenorhabditis elegans] 1.0E-22
Protein Domains
Database ID Description E-Value
scop a.4.5.Lrp/AsnC-like transcriptional regulator N-terminal domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Lrp/AsnC-like transcriptional regulator N-terminal domain 4.30000019073486
Sequence
Target Sequence 
>C. ELEGANS:180127_AT
gaaggcatcttgatccaaacatggaagaaaacttcaaacatcttaccgcaagaacgtttg
gtgacatcgcccaggaatgtttggatgataatgatgctcaggttccaatcccgattgatc
gccctgtaagacaacggcgacgcagaaaaacgacaacagttaatcctgaagagttattag
acgataatgcattggctgaagaagttctacgaaatgagtatgctgccagaataaagcctg
aaatacctgaagattcattgggcggtaaagtaggcaagcagggaacatcgggagttgcaa
gaattcgggcaccaaaacgtgcaaatgcgaaattggttgaagtgaaacgagaacaaatcc
cacaaacttctgctccgataactgcttcccaaattgacgaatcattcacatcgcctgcga
acaagaagaacagaaaatcggccagcgtagttgaagtgaaacctcgaatcagtgatgaat
gggccaacaaactgcacgcatggcatggacaagtcgaggctacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGCATCTTGATCCAAACATGGA 154 333 842 Antisense
AAAACTTCAAACATCTTACCGCAAG 7 123 869 Antisense
ACGTTTGGTGACATCGCCCAGGAAT 378 75 895 Antisense
GCTCAGGTTCCAATCCCGATTGATC 566 301 937 Antisense
GATTGATCGCCCTGTAAGACAACGG 162 417 954 Antisense
ACAAACTTCTGCTCCGATAACTGCT 461 111 1203 Antisense
CGATAACTGCTTCCCAAATTGACGA 18 247 1217 Antisense
TTGACGAATCATTCACATCGCCTGC 524 705 1235 Antisense
AATCGGCCAGCGTAGTTGAAGTGAA 103 169 1277 Antisense
ATGGGCCAACAAACTGCACGCATGG 45 51 1320 Antisense
GGCATGGACAAGTCGAGGCTACGGA 699 535 1343 Antisense
Sequence Source Affymetrix Proprietary Database