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[180126_s_at]

Description Y68A4A.1 /REP_DB=WormBase Gene ID /WP=CE19253 /TR=Q9XXQ0 /GB=CAA16419.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 18      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 3.5
(-2.9)
A 		24
(-0.8)
A 		2.2
(-3)
A 		62.2
(3)
A 		60
B 3.5
(-0.1)
A 		3.2
(-0.4)
A 		0.9
(-3)
A 		6.2
(3)
A 		5
C 5
(-2.3)
A 		3.4
(-3)
A 		3.7
(-2.9)
A 		17.8
(3)
A 		14
avr 4
(-2.6) 		10.2
(-1.2) 		2.3
(-3) 		28.7
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.9
(1.6)
A 		3
(-2.2)
A 		2.9
(-2.3)
A 		4.9
(0.3)
A 		2.4
(-3)
A 		7
(3)
A 		5
B 2.6
(-1)
A 		1.1
(-3)
A 		5.7
(3)
A 		2.2
(-1.6)
A 		5
(2.1)
A 		2.2
(-1.6)
A 		5
C 1
(-3)
A 		3.1
(-1.9)
A 		5.1
(-0.9)
A 		7.9
(0.6)
A 		12.6
(3)
A 		1.1
(-2.9)
A 		12
avr 3.2
(-1.9) 		2.4
(-3) 		4.6
(0.1) 		5
(0.6) 		6.7
(3) 		3.4
(-1.6) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.3
(-2.5)
A 		5.2
(0.2)
A 		0.6
(-3)
A 		9.1
(3)
A 		9
B 1.1
(1.9)
A 		0.8
(0.3)
A 		0.2
(-3)
A 		1.3
(3)
A 		1
C 1.7
(-0.9)
A 		1
(-3)
A 		1.3
(-2.1)
A 		3
(3)
A 		2
avr 1.4
(-1.9) 		2.3
(-0.5) 		0.7
(-3) 		4.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.1
(-0.3)
A 		1.1
(-0.3)
A 		0.6
(-3)
A 		1.2
(0.3)
A 		0.7
(-2.5)
A 		1.7
(3)
A 		1
B 0.9
(-1.2)
A 		0.4
(-3)
A 		1.4
(0.5)
A 		0.6
(-2.3)
A 		2.1
(3)
A 		0.8
(-1.6)
A 		2
C 0.4
(-3)
A 		0.9
(-2.2)
A 		1.3
(-1.5)
A 		1.6
(-1.1)
A 		4.1
(3)
A 		0.4
(-3)
A 		4
avr 0.8
(-3) 		0.8
(-3) 		1.1
(-1.8) 		1.1
(-1.8) 		2.3
(3) 		1
(-2.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180126_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14049
Sequence Type Exemplar sequence
Representative Public ID Y68A4A.1 NCBI
Target Description Y68A4A.1 /REP_DB=WormBase Gene ID /WP=CE19253 /TR=Q9XXQ0 /GB=CAA16419.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075016(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075016 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-203) (srh-203) mRNA, complete cds. 11/11 A 
Y68A4A.1 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17189451:17191258:-1 gene:Y68A4A.1 11/11 A 
F20E11.10 ENSEMBL cdna:known chromosome:CEL140:V:17457072:17458874:-1 gene:F20E11.10 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011468 1/11 Cross Hyb Matching Probes None
GENEFINDER00000027642 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17189528-17191258(-) 100.0 100.0
chrV:17457149-17458874(-) 92.65 92.65
Public Domain and Genome References
Gene Title
Gene Symbol srh-203
Ensembl Y68A4A.1
F20E11.10
Entrez Gene 184738 Entrez gene
SwissProt Q9XV78 EMBL-EBI
WormBase CE18619 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04147 Hypothetical protein F20E11.10 [Caenorhabditis elegans] ref|NP_507417.1| Serpentine Receptor, class H family member (srh-203) [Caenorhabditis elegans] 0.0
blast T27299 hypothetical protein Y68A4A.1 - Caenorhabditis elegans 1.0E-161
blast AAB94165 Serpentine receptor, class h protein 204 [Caenorhabditis elegans] ref|NP_504171.1| Serpentine Receptor, class H family member (srh-204) [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507417.1 7 20-42,55-77,97-119,140-162,200-222,243-265,278-300
F20E11.10 7 20-42,55-77,97-119,140-162,200-222,243-265,278-300
Sequence
Target Sequence 
>C. ELEGANS:180126_S_AT
tgcactttctcgtggaaaccaaaatgggaatcctttaagtcaatttttatgccgtttcac
tattttatctacacatttatgctttctatcatcttctttctcgtcccagaacaaaaatcc
gcattgcagcaggtgtttcagacacttccctgccttcctcgtgaaatatacgaagctccc
gtctatgtgatcgccgacgatgttacttttcacgtaatcgtcatatttctaggcgtagta
gctgtcactgtagaaatactattttatcttatgtacctcatctggaacagtatcaagcag
ttgaaggaaaataaaatgtcacagaagacatttcaacttcaaaagcaatttttaatcgcg
attatcgtgcagagcagtgtcccaatgatctttttcatcattcctcttctaacttttttg
tttgcgtttttggaaggttactataatcaaggaattgtcaactttcaatttataattgca
tcattacacgggatagtttcaacgttggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACTTTCTCGTGGAAACCAAAAT 381 575 391 Antisense
AAATCCGCATTGCAGCAGGTGTTTC 656 117 505 Antisense
GAAATATACGAAGCTCCCGTCTATG 292 353 553 Antisense
ATACGAAGCTCCCGTCTATGTGATC 448 23 558 Antisense
TCCCGTCTATGTGATCGCCGACGAT 206 597 567 Antisense
GTGATCGCCGACGATGTTACTTTTC 556 481 577 Antisense
GTAATCGTCATATTTCTAGGCGTAG 16 463 604 Antisense
TCTAGGCGTAGTAGCTGTCACTGTA 403 609 618 Antisense
AGCTGTCACTGTAGAAATACTATTT 103 81 630 Antisense
GTCACAGAAGACATTTCAACTTCAA 458 465 708 Antisense
ACACGGGATAGTTTCAACGTTGGCA 666 81 876 Antisense
Sequence Source Affymetrix Proprietary Database