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[180125_at]

Description Y68A4A.1 /REP_DB=WormBase Gene ID /WP=CE19253 /TR=Q9XXQ0 /GB=CAA16419.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 15      6grp_total > 22      4grp_total > 33      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 29.9
(-2.7)
P 		60.6
(3)
M 		43.7
(-0.1)
A 		28
(-3)
A 		33
B 39.9
(-0.9)
P 		31.4
(-3)
A 		50.3
(1.6)
P 		55.9
(3)
P 		25
C 33.2
(-2)
P 		37.5
(-0.9)
P 		29.6
(-3)
P 		51.8
(3)
P 		22
avr 34.3
(-3) 		43.2
(1.9) 		41.2
(0.8) 		45.2
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 44.4
(3)
A 		36.1
(1.8)
A 		27.8
(0.6)
P 		20.5
(-0.4)
A 		25.5
(0.3)
A 		2.6
(-3)
A 		42
B 35.7
(1.9)
P 		38.1
(2.3)
P 		42.6
(3)
P 		15.7
(-1.1)
A 		3.2
(-3)
A 		28.6
(0.9)
A 		39
C 18.7
(-3)
A 		38.6
(3)
P 		28.6
(-0)
A 		29.4
(0.2)
A 		28.3
(-0.1)
A 		21.2
(-2.2)
A 		20
avr 32.9
(1.6) 		37.6
(3) 		33
(1.6) 		21.9
(-1.7) 		19
(-2.6) 		17.5
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 10.9
(1.5)
P 		13.1
(3)
M 		11.4
(1.9)
A 		4.1
(-3)
A 		9
B 12.7
(3)
P 		7.8
(-3)
A 		11.6
(1.7)
P 		11.9
(2)
P 		5
C 11
(3)
P 		10.8
(2.5)
P 		10.3
(1.2)
P 		8.7
(-3)
P 		2
avr 11.5
(3) 		10.6
(1.4) 		11.1
(2.3) 		8.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.2
(0.7)
A 		12.8
(3)
A 		6.1
(-0.3)
P 		5.2
(-0.7)
A 		7.7
(0.5)
A 		0.6
(-3)
A 		12
B 12.4
(2.8)
P 		12.7
(3)
P 		10.3
(1.7)
P 		4.2
(-1.5)
A 		1.3
(-3)
A 		10.6
(1.9)
A 		11
C 6.9
(-2)
A 		11.8
(3)
P 		7.3
(-1.6)
A 		5.9
(-3)
A 		9.2
(0.4)
A 		7.1
(-1.8)
A 		6
avr 9.2
(0.4) 		12.4
(3) 		7.9
(-0.7) 		5.1
(-3) 		6.1
(-2.2) 		6.1
(-2.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180125_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14049
Sequence Type Exemplar sequence
Representative Public ID Y68A4A.1 NCBI
Target Description Y68A4A.1 /REP_DB=WormBase Gene ID /WP=CE19253 /TR=Q9XXQ0 /GB=CAA16419.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075016
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y68A4A.1 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17189451:17191258:-1 gene:Y68A4A.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011468 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17189528-17191258(-) 100.0 100.0
chrV:17457149-17458874(-) 92.65 92.65
Public Domain and Genome References
Ensembl Y68A4A.1
Sequence
Target Sequence 
>C. ELEGANS:180125_AT
gcggtttattgttttggactcatgttcattgctatcgttgttatattcgagaatcgattt
cgcgtcatatgcactttctcgtggaaaccaaaatgggaatcctttaagtcaatttttatg
ccgtttcactattttatctacacatttatgctttctatcatcttctttctcgtcccagaa
caaaaatccgcattgcagcaggtgtttcagacacttccctgccttcctcgtgaaatatac
gaagctcccgtctatgtgatcgccgacgatgttacttttcacgtaatcgtcatatttcta
ggcgtagtagctgtcactgtagaaatactattttatcttatgtacctcatctggaacagt
atcaagcagttgaaggaaaataaaatgtcacagaagacatttcaacttcaaaagcaattt
ttaatcgcgattatcgtgcagagcagtgtcccaatgatcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGTTTATTGTTTTGGACTCATGT 86 293 322 Antisense
GACTCATGTTCATTGCTATCGTTGT 84 375 338 Antisense
GAATCGATTTCGCGTCATATGCACT 241 329 372 Antisense
GATTTCGCGTCATATGCACTTTCTC 110 429 377 Antisense
TAAGTCAATTTTTATGCCGTTTCAC 620 633 426 Antisense
TTTATGCCGTTTCACTATTTTATCT 628 673 436 Antisense
TTATGCTTTCTATCATCTTCTTTCT 474 681 467 Antisense
TCTTCTTTCTCGTCCCAGAACAAAA 685 615 482 Antisense
GTCCCAGAACAAAAATCCGCATTGC 652 475 493 Antisense
TAATCGCGATTATCGTGCAGAGCAG 557 635 743 Antisense
GCAGAGCAGTGTCCCAATGATCTTT 539 311 759 Antisense
Sequence Source Affymetrix Proprietary Database