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[180124_at]

Description F29A7.3 /REP_DB=WormBase Gene ID /WP=CE09774 /TR=O16208 /GB=AAB65273.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 4.1
(-0)
A 		5.2
(3)
A 		3
(-3)
A 		4.6
(1.4)
A 		2
B 3.4
(3)
A 		3
(-1)
A 		3.1
(0)
A 		2.8
(-3)
A 		1
C 3.8
(-0.8)
A 		5.4
(3)
A 		2.9
(-3)
A 		4.7
(1.3)
A 		3
avr 3.8
(0.2) 		4.5
(3) 		3
(-3) 		4
(1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 5
(3)
A 		3.5
(-0.6)
A 		2.5
(-3)
A 		3.8
(0.1)
A 		4.6
(2)
A 		3.1
(-1.6)
A 		3
B 3.5
(0.6)
A 		3
(-1.4)
A 		4.1
(3)
A 		3.7
(1.4)
A 		2.6
(-3)
A 		3.5
(0.6)
A 		2
C 5.6
(3)
A 		2.4
(-3)
A 		3.5
(-0.9)
A 		4.7
(1.3)
A 		5.4
(2.6)
A 		2.6
(-2.6)
A 		3
avr 4.7
(3) 		3
(-3) 		3.4
(-1.6) 		4.1
(0.9) 		4.2
(1.2) 		3.1
(-2.6) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.5
(3)
A 		1.1
(0)
A 		0.8
(-2.3)
A 		0.7
(-3)
A 		1
B 1.1
(3)
A 		0.7
(-1.8)
A 		0.7
(-1.8)
A 		0.6
(-3)
A 		1
C 1.3
(0.8)
A 		1.6
(3)
A 		1
(-1.5)
A 		0.8
(-3)
A 		1
avr 1.3
(3) 		1.1
(1) 		0.8
(-2) 		0.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.9
(-0.3)
A 		1.3
(2.3)
A 		0.5
(-3)
A 		1
(0.3)
A 		1.4
(3)
A 		0.8
(-1)
A 		1
B 1.2
(1)
A 		1
(-3)
A 		1
(-3)
A 		1
(-3)
A 		1.1
(-1)
A 		1.3
(3)
A 		0
C 2.1
(3)
A 		0.7
(-3)
A 		0.9
(-2.1)
A 		0.9
(-2.1)
A 		1.7
(1.3)
A 		0.9
(-2.1)
A 		1
avr 1.4
(3) 		1
(-1) 		0.8
(-3) 		1
(-1) 		1.4
(3) 		1
(-1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180124_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5125
Sequence Type Exemplar sequence
Representative Public ID F29A7.3 NCBI
Target Description F29A7.3 /REP_DB=WormBase Gene ID /WP=CE09774 /TR=O16208 /GB=AAB65273.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061949
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000030193 ENSEMBL cdna:SNAP chromosome:CEL140:II:2753299:2754399:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061949 8/11 Cross Hyb Matching Probes None
GENEFINDER00000030199 8/11 Cross Hyb Matching Probes None
F29A7.3 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2753297-2754398(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65273 Hypothetical protein F29A7.3 [Caenorhabditis elegans] ref|NP_494350.2| F29A7.3 [Caenorhabditis elegans] 9.0E-71
blast CAB04192 Hypothetical protein F26F2.6 [Caenorhabditis elegans] ref|NP_507971.2| F26F2.6 [Caenorhabditis elegans] 5.0E-56
blast AAG24218 Hypothetical protein W10G11.11 [Caenorhabditis elegans] ref|NP_494587.1| W10G11.11 [Caenorhabditis elegans] 1.0E-54
Sequence
Target Sequence 
>C. ELEGANS:180124_AT
gaacattcttatattcgccctttgcgctctggcttccagtgccgctgaggctcccgggag
cagtcatagcccctctttcaaattcggaaccgtccacggagagcccgatgactacgccaa
ctcgaccagtgtccaagtcaaaaatttcaaagaatgcatcgaaaagtgctcggcaatatt
cgactgcattgtcgcgagccagaagagcccatcggagccgtgtaacttgttcctctggaa
ttcggtggaaaaagtgaaacggaacgattccggcggggaaggactgacggcgttccgcgt
gttcaccgagcaaccgagctgccgcgccgttctggacgaccttcgctgcggaaactggac
cgctctccgaccgtatgctgatggctgcactcctgattgcctagttaccatggtccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATTCTTATATTCGCCCTTTGC 290 351 18 Antisense
GAGGCTCCCGGGAGCAGTCATAGCC 260 403 64 Antisense
CGTCCACGGAGAGCCCGATGACTAC 591 245 108 Antisense
CCAACTCGACCAGTGTCCAAGTCAA 160 275 134 Antisense
AGTGCTCGGCAATATTCGACTGCAT 62 61 182 Antisense
GCATTGTCGCGAGCCAGAAGAGCCC 646 307 203 Antisense
AAGAGCCCATCGGAGCCGTGTAACT 382 153 220 Antisense
TCCGGCGGGGAAGGACTGACGGCGT 638 593 286 Antisense
GACCTTCGCTGCGGAAACTGGACCG 298 383 355 Antisense
CGACCGTATGCTGATGGCTGCACTC 441 251 385 Antisense
TGATTGCCTAGTTACCATGGTCCAG 627 561 411 Antisense
Sequence Source Affymetrix Proprietary Database