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[180123_at]

Description D2092.5 /REP_DB=WormBase Gene ID /WP=CE09104 /TR=P91193 /GB=AAB42225.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 47      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 103.3
(3)
P 		12.7
(-2.9)
A 		10.7
(-3)
A 		22.5
(-2.2)
A 		93
B 91
(3)
A 		5.4
(-3)
A 		6.8
(-2.9)
A 		28.9
(-1.4)
A 		86
C 85.6
(3)
A 		7.7
(-3)
A 		23.1
(-1.8)
A 		22.5
(-1.9)
A 		78
avr 93.3
(3) 		8.6
(-3) 		13.5
(-2.7) 		24.6
(-1.9) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 80.6
(3)
A 		39.7
(-0.2)
A 		4.2
(-3)
A 		19.2
(-1.8)
A 		48.1
(0.4)
A 		41.6
(-0.1)
A 		76
B 94.7
(3)
A 		22.9
(-1.7)
A 		21.4
(-1.8)
A 		28.1
(-1.3)
A 		2.7
(-3)
A 		17.4
(-2)
A 		92
C 136
(3)
M 		45.9
(-1.1)
A 		29.5
(-1.8)
A 		3.9
(-2.9)
A 		2.7
(-3)
A 		24.3
(-2)
A 		133
avr 103.8
(3) 		36.2
(-1.7) 		18.4
(-2.9) 		17.1
(-3) 		17.8
(-3) 		27.8
(-2.3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 37.6
(3)
P 		2.8
(-3)
A 		2.8
(-3)
A 		3.3
(-2.9)
A 		35
B 29
(3)
A 		1.3
(-3)
A 		1.6
(-2.9)
A 		6.2
(-1.9)
A 		28
C 28.3
(3)
A 		2.2
(-3)
A 		8.1
(-1.6)
A 		3.8
(-2.6)
A 		26
avr 31.6
(3) 		2.1
(-3) 		4.2
(-2.6) 		4.4
(-2.5) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 14.8
(3)
A 		14.1
(2.7)
A 		0.9
(-3)
A 		4.9
(-1.3)
A 		14.5
(2.9)
A 		10.1
(1)
A 		14
B 33
(3)
A 		7.6
(-1.8)
A 		5.2
(-2.2)
A 		7.4
(-1.8)
A 		1.1
(-3)
A 		6.5
(-2)
A 		32
C 50.4
(3)
M 		14
(-1.4)
A 		7.5
(-2.2)
A 		0.8
(-3)
A 		0.9
(-3)
A 		8.1
(-2.1)
A 		50
avr 32.7
(3) 		11.9
(-1.4) 		4.5
(-3) 		4.4
(-3) 		5.5
(-2.8) 		8.2
(-2.2) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180123_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2175
Sequence Type Exemplar sequence
Representative Public ID D2092.5 NCBI
Target Description D2092.5 /REP_DB=WormBase Gene ID /WP=CE09104 /TR=P91193 /GB=AAB42225.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059501(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059501 NCBI Caenorhabditis elegans D2092.5 (D2092.5) mRNA, complete cds. 11/11 None
SNAP00000030843 ENSEMBL cdna:SNAP chromosome:CEL140:I:6608119:6615651:-1 11/11 None
GENEFINDER00000030864 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6608119:6611748:-1 11/11 None
D2092.5 ENSEMBL cdna:known chromosome:CEL140:I:6606361:6616003:-1 gene:D2092.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6608047-6615932(-) 98.66 100.0
Public Domain and Genome References
Gene Title
Ensembl D2092.5
Entrez Gene 183963 Entrez gene
SwissProt P91193 EMBL-EBI
WormBase CE30439 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18762.1.S1_S_AT similar to transmembrane protein 57 cfa
CANINE_2:CFA.20715.1.S1_S_AT similar to transmembrane protein 57 cfa
CANINE_2:CFAAFFX.19832.1.S1_AT similar to transmembrane protein 57 cfa
DROSOPHILA_2:1637947_S_AT dm
DROSGENOME1:142527_AT dm
DROSGENOME1:142526_AT dm
CHICKEN:GGA.11902.1.A1_AT transmembrane protein 57 gga
CHICKEN:GGA.19288.1.S1_AT transmembrane protein 57 gga
CHICKEN:GGAAFFX.11841.1.S1_S_AT transmembrane protein 57 gga
HG-U133_PLUS_2:218562_S_AT transmembrane protein 57 hs
HG-U133A:218562_S_AT transmembrane protein 57 hs
HG-U133A_2:218562_S_AT transmembrane protein 57 hs
HG-U133_PLUS_2:222673_X_AT transmembrane protein 57 hs
HG-U133B:222673_X_AT transmembrane protein 57 hs
U133_X3P:G8922637_3P_A_AT transmembrane protein 57 hs
HG-U95D:75716_AT transmembrane protein 57 hs
HG-U95E:89399_AT transmembrane protein 57 hs
MG-U74BV2:115064_AT transmembrane protein 57 mm
MG-U74BV2:115093_AT transmembrane protein 57 mm
MG-U74CV2:135197_AT transmembrane protein 57 mm
MOE430B:1430418_AT transmembrane protein 57 mm
MOUSE430_2:1430418_AT transmembrane protein 57 mm
MOE430B:1428884_AT transmembrane protein 57 mm
MOUSE430_2:1428884_AT transmembrane protein 57 mm
MOE430B:1428883_AT transmembrane protein 57 mm
MOUSE430_2:1428883_AT transmembrane protein 57 mm
MOE430B:1458545_AT Transmembrane protein 57, mRNA (cDNA clone IMAGE:5702751) mm
MOUSE430_2:1458545_AT Transmembrane protein 57, mRNA (cDNA clone IMAGE:5702751) mm
MU19KSUBA:TC20276_AT Transmembrane protein 57, mRNA (cDNA clone IMAGE:5702751) mm
MU19KSUBB:TC29062_AT Transmembrane protein 57, mRNA (cDNA clone IMAGE:5702751) mm
MU19KSUBC:TC41197_AT Transmembrane protein 57, mRNA (cDNA clone IMAGE:5702751) mm
MU19KSUBC:TC41197_G_AT Transmembrane protein 57, mRNA (cDNA clone IMAGE:5702751) mm
RAE230B:1393136_AT similar to RIKEN cDNA 1110007C24 rn
RAT230_2:1393136_AT similar to RIKEN cDNA 1110007C24 rn
RAE230A:1393544_AT Similar to RIKEN cDNA 1110007C24 rn
RAT230_2:1393544_AT Similar to RIKEN cDNA 1110007C24 rn
RAE230B:1398737_AT Similar to RIKEN cDNA 1110007C24 rn
RAT230_2:1398737_AT Similar to RIKEN cDNA 1110007C24 rn
RG-U34A:RC_AA859687_AT Similar to RIKEN cDNA 1110007C24 rn
Protein Similarities
Method ID Description E-Value
blast AAB42225 Hypothetical protein D2092.5 [Caenorhabditis elegans] ref|NP_491902.2| D2092.5 [Caenorhabditis elegans] 0.0
blast CAE67242 Hypothetical protein CBG12682 [Caenorhabditis briggsae] 0.0
blast AAM70856 CG30389-PC, isoform C [Drosophila melanogaster] gb|AAF46685.2| CG30389-PA, isoform A [Drosophila melanogaster] ref|NP_611556.2| CG30389-PC, isoform C [Drosophila melanogaster] ref|NP_611555.2| CG30389-PA, isoform A [Drosophila melanogaster] 4.0E-25
blast XP_395855 PREDICTED: hypothetical protein XP_395855 [Apis mellifera] 4.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491902.2 6 20-42,157-179,199-221,228-250,260-282,435-453
D2092.5 6 20-42,157-179,199-221,228-250,260-282,435-453
SNAP00000030843 3 112-134,169-191,343-361
Sequence
Target Sequence 
>C. ELEGANS:180123_AT
gagatgctcgtgacactatcaaatcattggagcgacgagttcaggaatttcagatcaaaa
atggatcgtcaattggtggtggaagtagtgagacgttgatgaatggacgatcatcgactg
aagctaataatgagaatgatacgactgcttctgatcaatcatcaccacatcaacattctg
ccatgggatcacctgttccatttgccaaaatgcctctctccgtgaatgtttctaatcgac
atggatcacctttcaacggcaaagtttcaccaattgcatcaattggctcagttttggccg
cagccggtggaccagcacctccagattatatgatggctgttggagcaaatgttacagcta
cgactgggccagttccacagaaacagcctcgtgccggttttcatggaattagcagataca
acgaattcacaaacatcgcatcaggaggcgagcatcggctttttgacactccagcttctg
ctatttcggcatctgctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATGCTCGTGACACTATCAAATC 489 395 2336 Antisense
ATACGACTGCTTCTGATCAATCATC 174 23 2474 Antisense
CACCACATCAACATTCTGCCATGGG 139 203 2498 Antisense
CCTCTCTCCGTGAATGTTTCTAATC 590 267 2548 Antisense
TCGACATGGATCACCTTTCAACGGC 6 601 2571 Antisense
TCAATTGGCTCAGTTTTGGCCGCAG 240 635 2614 Antisense
GACCAGCACCTCCAGATTATATGAT 469 383 2645 Antisense
ACAGCTACGACTGGGCCAGTTCCAC 37 93 2689 Antisense
CAGTTCCACAGAAACAGCCTCGTGC 249 207 2705 Antisense
AGGCGAGCATCGGCTTTTTGACACT 639 53 2781 Antisense
CTTCTGCTATTTCGGCATCTGCTAT 175 221 2810 Antisense
Sequence Source Affymetrix Proprietary Database