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[180122_at]

Description C25B8.3 /REP_DB=WormBase Gene ID /WP=CE04078 /GEN=cpr-6 /GB=AAK39189.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 39      6grp_total > 73      4grp_total > 25      6grp_highest_sub > 04      6grp_cgc > 76      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11487
1 2 3 4 range
A 3724
(-3)
P 		9056
(-0)
P 		8072.2
(-0.6)
P 		14526.4
(3)
P 		10802
B 4031.4
(-3)
P 		8486.7
(-0.5)
P 		9010.1
(-0.2)
P 		14794.3
(3)
P 		10763
C 3788.2
(-3)
P 		8285
(-0.6)
P 		7997.5
(-0.8)
P 		15211.2
(3)
P 		11423
avr 3847.9
(-3) 		8609.2
(-0.4) 		8359.9
(-0.5) 		14844
(3) 		10996

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10002
1 2 3 4 5 6 range
A 2394.3
(-3)
P 		4944.4
(-1.5)
P 		8742.9
(0.8)
P 		12301.5
(3)
P 		8723.9
(0.8)
P 		6343.8
(-0.6)
P 		9907
B 2299.8
(-3)
P 		4492.4
(-1.6)
P 		10047.4
(1.9)
P 		11754.5
(3)
P 		8648
(1)
P 		5230.5
(-1.1)
P 		9455
C 2318.2
(-3)
P 		4348.4
(-1.8)
P 		9542.9
(1.4)
P 		12237.8
(3)
P 		9745.1
(1.5)
P 		5333.5
(-1.2)
P 		9920
avr 2337.4
(-3) 		4595.1
(-1.6) 		9444.4
(1.4) 		12097.9
(3) 		9039
(1.1) 		5635.9
(-1) 		9761
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1899
1 2 3 4 range
A 1355.9
(-3)
P 		1965.8
(1.7)
P 		2110.2
(2.9)
P 		2126.4
(3)
P 		771
B 1285.6
(-3)
P 		2096
(-0.4)
P 		2087.9
(-0.4)
P 		3152.7
(3)
P 		1867
C 1254
(-3)
P 		2382
(1.4)
P 		2787.4
(3)
P 		2564.8
(2.1)
P 		1533
avr 1298.5
(-3) 		2147.9
(0.9) 		2328.5
(1.7) 		2614.6
(3) 		1316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3072
1 2 3 4 5 6 range
A 441.4
(-3)
P 		1758.5
(-0)
P 		1904
(0.3)
P 		3119.9
(3)
P 		2632.5
(1.9)
P 		1544.5
(-0.5)
P 		2679
B 800.2
(-3)
P 		1495.3
(-1.5)
P 		2439.8
(0.6)
P 		3113.4
(2.1)
P 		3513.6
(3)
P 		1950.4
(-0.5)
P 		2713
C 859.3
(-3)
P 		1326.8
(-1.8)
P 		2428.8
(1.1)
P 		2461
(1.2)
P 		3153.4
(3)
P 		1785.4
(-0.6)
P 		2294
avr 700.3
(-3) 		1526.9
(-0.9) 		2257.5
(0.9) 		2898.1
(2.5) 		3099.8
(3) 		1760.1
(-0.3) 		2400
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180122_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16686
Sequence Type Exemplar sequence
Representative Public ID C25B8.3 NCBI
Target Description C25B8.3 /REP_DB=WormBase Gene ID /WP=CE04078 /GEN=cpr-6 /GB=AAK39189.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171708(11), NM_001029255(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171708 NCBI Caenorhabditis elegans Cysteine PRotease related family member (cpr-6) (cpr-6) mRNA, complete cds. 11/11 None
NM_001029255 NCBI Caenorhabditis elegans Cysteine PRotease related family member (cpr-6) (cpr-6) mRNA, complete cds. 11/11 None
GENEFINDER00000010950 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6607050:6608925:1 11/11 None
SNAP00000010938 ENSEMBL cdna:SNAP chromosome:CEL140:X:6607068:6608746:1 10/11 None
C25B8.3a ENSEMBL cdna:known chromosome:CEL140:X:6607161:6609000:1 gene:C25B8.3 11/11 None
C25B8.3b ENSEMBL cdna:known chromosome:CEL140:X:6607162:6608925:1 gene:C25B8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6607257-6608925(+) 99.82 99.82
Public Domain and Genome References
Ensembl C25B8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39189 Cysteine protease related protein 6, isoform a [Caenorhabditis elegans] ref|NP_741818.1| Cysteine PRotease related family member (cpr-6) [Caenorhabditis elegans] sp|P43510|CPR6_CAEEL Cathepsin B-like cysteine proteinase 6 precursor (Cysteine protease-related 6) gb|AAA98789.1| cathepsin B-like cysteine proteinase gb|AAA98787.1| cathepsin B-like cysteine proteinase [Caenorhabditis elegans] 0.0
blast AAM51519 Cysteine protease related protein 6, isoform b [Caenorhabditis elegans] ref|NP_001024426.1| Cysteine PRotease related family member (cpr-6) [Caenorhabditis elegans] 0.0
blast CAE65760 Hypothetical protein CBG10849 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 6.1E-125
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 6.1E-125
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 6.1E-125
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 6.1E-125
Sequence
Target Sequence 
>C. ELEGANS:180122_AT
acggaggagatccattggctgcctggcgctactgggtgaaggatggaatcgttactggat
caaactacaccgctaacaatgggtgcaagccatacccattcccaccatgtgagcatcact
cgaagaaaacccacttcgatccatgtccacacgatttgtacccaactccaaaatgtgaaa
agaagtgcgtttctgattacactgacaagacttactccgaggacaaattctttggcgcca
gcgcgtacggagtcaaggatgacgttgaagccatccagaaagaattgatgactcacggac
cccttgagatcgctttcgaggtttacgaggatttcttgaactatgacggtggagtctatg
ttcacaccggaggaaagctcggaggaggacacgccgtcaagcttatcggatggggtattg
acgatggaatcccatactggacagttgccaactcttggaacaccgactggggagaggatg
gattcttccgtatcctgagaggagttgatgagtgtggaattgaatctggagttgttggag
gaattccaaagctcaatagtcttacctcaagacttcacagacaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGAGGAGATCCATTGGCTGCCTG 594 95 536 Antisense
TGGATCAAACTACACCGCTAACAAT 55 503 591 Antisense
ATTCCCACCATGTGAGCATCACTCG 329 9 633 Antisense
ATGTCCACACGATTTGTACCCAACT 99 47 678 Antisense
GCCAGCGCGTACGGAGTCAAGGATG 245 279 772 Antisense
AAGAATTGATGACTCACGGACCCCT 532 151 815 Antisense
ACCCCTTGAGATCGCTTTCGAGGTT 621 89 834 Antisense
GACACGCCGTCAAGCTTATCGGATG 598 367 923 Antisense
AGTTGCCAACTCTTGGAACACCGAC 399 63 978 Antisense
GGATGGATTCTTCCGTATCCTGAGA 7 515 1011 Antisense
TACCTCAAGACTTCACAGACACCAC 561 649 1098 Antisense
Sequence Source Affymetrix Proprietary Database