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[180121_at]

Description ZK380.4 /REP_DB=WormBase Gene ID /WP=CE18453 /TR=O61763 /GB=AAC17012.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 7.3
(-3)
A 		16
(1.4)
A 		14.4
(0.6)
A 		19.3
(3)
A 		12
B 12
(-2.7)
A 		9.2
(-3)
A 		12.4
(-2.7)
A 		68
(3)
A 		59
C 13.8
(-1)
A 		30.9
(3)
A 		5.3
(-3)
A 		24.6
(1.5)
A 		26
avr 11
(-2.9) 		18.7
(-1.2) 		10.7
(-3) 		37.3
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 19.1
(1)
A 		9.1
(-1.8)
A 		26.5
(3)
A 		4.7
(-3)
A 		15.2
(-0.1)
A 		4.9
(-2.9)
A 		22
B 15.1
(3)
A 		9.1
(-0.5)
A 		9.7
(-0.1)
A 		11.9
(1.1)
A 		9.8
(-0.1)
A 		4.8
(-3)
A 		10
C 9.1
(-0.9)
A 		15.4
(1.4)
A 		19.8
(3)
A 		6.8
(-1.8)
A 		8
(-1.3)
A 		3.5
(-3)
A 		16
avr 14.4
(1.2) 		11.2
(-0.1) 		18.7
(3) 		7.8
(-1.6) 		11
(-0.2) 		4.4
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.7
(-3)
A 		3.5
(1.4)
A 		3.8
(3)
A 		2.8
(-2.5)
A 		1
B 3.8
(-2.3)
A 		2.3
(-3)
A 		2.9
(-2.7)
A 		14.5
(3)
A 		12
C 4.6
(-0.7)
A 		8.9
(3)
A 		1.9
(-3)
A 		4.2
(-1)
A 		7
avr 3.7
(-1.9) 		4.9
(-0.2) 		2.9
(-3) 		7.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 3.5
(0)
A 		3.3
(-0.3)
A 		5.8
(3)
A 		1.2
(-3)
A 		4.6
(1.4)
A 		1.2
(-3)
A 		5
B 5.3
(3)
A 		3
(-0.9)
A 		2.4
(-2)
A 		3.2
(-0.6)
A 		4
(0.8)
A 		1.8
(-3)
A 		4
C 3.4
(0.5)
A 		4.7
(2.5)
A 		5
(3)
A 		1.4
(-2.7)
A 		2.6
(-0.8)
A 		1.2
(-3)
A 		4
avr 4.1
(2.4) 		3.7
(1.6) 		4.4
(3) 		1.9
(-2) 		3.7
(1.6) 		1.4
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180121_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18173
Sequence Type Exemplar sequence
Representative Public ID ZK380.4 NCBI
Target Description ZK380.4 /REP_DB=WormBase Gene ID /WP=CE18453 /TR=O61763 /GB=AAC17012.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075902(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075902 NCBI Caenorhabditis elegans ZK380.4 (ZK380.4) mRNA, complete cds. 11/11 None
SNAP00000026597 ENSEMBL cdna:SNAP chromosome:CEL140:X:1651414:1651989:-1 9/11 None
GENEFINDER00000026603 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1651414:1651986:-1 9/11 None
ZK380.4 ENSEMBL cdna:known chromosome:CEL140:X:1651414:1653892:-1 gene:ZK380.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1651413-1653892(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK380.4
Entrez Gene 191305 Entrez gene
SwissProt O61763 EMBL-EBI
WormBase CE18453 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17012 Hypothetical protein ZK380.4 [Caenorhabditis elegans] ref|NP_508303.1| ZK380.4 [Caenorhabditis elegans] 1.0E-141
blast AAC17012 Hypothetical protein ZK380.4 [Caenorhabditis elegans] ref|NP_508303.1| ZK380.4 [Caenorhabditis elegans] 1.0E-110
blast CAB04009 Hypothetical protein C55A1.9 [Caenorhabditis elegans] ref|NP_506887.1| C55A1.9 [Caenorhabditis elegans] 9.0E-39
blast CAB04009 Hypothetical protein C55A1.9 [Caenorhabditis elegans] ref|NP_506887.1| C55A1.9 [Caenorhabditis elegans] 2.0E-35
Sequence
Target Sequence 
>C. ELEGANS:180121_AT
ggacctgtcagtttctactttatcattttcaattttcagccttaccatgatgcctatcaa
aggatcaattgtgtacgaacttccaacccttcccaactatattccacctcgacctacaga
aaataagagaattccaccaccggtgctatcaaaaatgggtggaaaatgtccaaaattgcc
agaactcgtggagccaaacacctacggtaacggtgaaaccgtgatgactggccaacctag
aagcgcccccgaggctcgtattttccaacaccccattgacccagtcaagtactttgcgca
attcaaagatcccaacaattgcatgaagccacaggagaagccggttcccttattcaagat
cattcgccgttccgaatcccttaacacaaggaagaagaccatccaggaggtttcaaagtt
cgcaaacaagtcaccagtatggaatacttctaaagctacagccgatgatattgttggtag
aattctgacaggtggacagtgggaacgtgaacatttgcctccggtggtgccaaaagctca
acgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACCTGTCAGTTTCTACTTTATCA 554 523 126 Antisense
TCAGCCTTACCATGATGCCTATCAA 591 625 161 Antisense
CAATTGTGTACGAACTTCCAACCCT 694 179 191 Antisense
TATTCCACCTCGACCTACAGAAAAT 438 665 225 Antisense
GAATTCCACCACCGGTGCTATCAAA 12 325 254 Antisense
ACTCGTGGAGCCAAACACCTACGGT 264 97 309 Antisense
GTGAAACCGTGATGACTGGCCAACC 702 409 338 Antisense
GAAGCCACAGGAGAAGCCGGTTCCC 600 343 450 Antisense
TTATTCAAGATCATTCGCCGTTCCG 213 677 475 Antisense
GTGGGAACGTGAACATTTGCCTCCG 8 487 624 Antisense
CCGGTGGTGCCAAAAGCTCAACGAC 188 263 646 Antisense
Sequence Source Affymetrix Proprietary Database