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[180120_at] 7TM chemoreceptor, sri family

Description F22E5.4 /REP_DB=WormBase Gene ID /WP=CE09556 /TR=O16714 /GB=AAB66170.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 11      6grp_cgc > 65      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 62.6
(-2.2)
A 		49.1
(-3)
A 		59.9
(-2.3)
A 		146.8
(3)
A 		98
B 54.2
(-1.8)
A 		67.6
(-1)
A 		32.7
(-3)
A 		138.1
(3)
P 		105
C 90.3
(0.4)
A 		75.3
(-0.9)
A 		50.5
(-3)
A 		121
(3)
A 		71
avr 69
(-1.5) 		64
(-1.9) 		47.7
(-3) 		135.3
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 25.4
(-3)
A 		34.5
(-1.9)
A 		46.2
(-0.4)
A 		74.2
(3)
A 		45.8
(-0.5)
A 		54.1
(0.5)
A 		49
B 28.5
(-3)
A 		57.3
(3)
A 		50.4
(1.6)
A 		44.8
(0.4)
A 		54.5
(2.4)
A 		44
(0.2)
A 		29
C 18.8
(-2.3)
A 		48.1
(1.2)
A 		54.4
(1.9)
A 		12.7
(-3)
A 		50
(1.4)
A 		63.7
(3)
M 		51
avr 24.2
(-3) 		46.6
(1.5) 		50.3
(2.3) 		43.9
(1) 		50.1
(2.2) 		53.9
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 22.8
(3)
A 		10.7
(-3)
A 		15.6
(-0.6)
A 		21.5
(2.4)
A 		12
B 17.3
(-0.3)
A 		16.7
(-0.5)
A 		7.6
(-3)
A 		29.4
(3)
P 		22
C 29.9
(3)
A 		21.6
(-1)
A 		17.6
(-3)
A 		20.4
(-1.6)
A 		12
avr 23.3
(2.7) 		16.3
(-1.4) 		13.6
(-3) 		23.8
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 4.7
(-3)
A 		12.3
(0.2)
A 		10.1
(-0.7)
A 		18.8
(3)
A 		13.8
(0.9)
A 		13.2
(0.6)
A 		14
B 9.9
(-3)
A 		19.1
(1.5)
A 		12.2
(-1.9)
A 		11.9
(-2)
A 		22.1
(3)
A 		16.4
(0.2)
A 		12
C 7
(-1.6)
A 		14.7
(0.9)
A 		13.9
(0.6)
A 		2.6
(-3)
A 		16.2
(1.4)
A 		21.3
(3)
M 		19
avr 7.2
(-3) 		15.4
(1.8) 		12.1
(-0.1) 		11.1
(-0.7) 		17.4
(3) 		17
(2.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180120_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5811
Sequence Type Exemplar sequence
Representative Public ID F22E5.4 NCBI
Target Description F22E5.4 /REP_DB=WormBase Gene ID /WP=CE09556 /TR=O16714 /GB=AAB66170.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061922(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061922 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-47) (sri-47) mRNA, complete cds. 11/11 None
GENEFINDER00000023624 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2656907:2659175:1 11/11 None
F22E5.4 ENSEMBL cdna:known chromosome:CEL140:II:2656907:2658259:1 gene:F22E5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023612 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2656905-2658258(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-47
Ensembl F22E5.4
Entrez Gene 184833 Entrez gene
SwissProt O16714 EMBL-EBI
WormBase CE33624 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494323 Serpentine Receptor, class I family member (sri-47) [Caenorhabditis elegans] gb|AAB66170.2| Serpentine receptor, class i protein 47 [Caenorhabditis elegans] 0.0
blast AAB37947 Serpentine receptor, class i protein 48 [Caenorhabditis elegans] ref|NP_494470.1| Serpentine Receptor, class I family member (sri-48) [Caenorhabditis elegans] 1.0E-166
blast AAB37947 Serpentine receptor, class i protein 48 [Caenorhabditis elegans] ref|NP_494470.1| Serpentine Receptor, class I family member (sri-48) [Caenorhabditis elegans] 1.0E-165
blast NP_494305 Serpentine Receptor, class I family member (sri-38) [Caenorhabditis elegans] gb|AAB66069.2| Serpentine receptor, class i protein 38 [Caenorhabditis elegans] 4.0E-66
blast NP_494305 Serpentine Receptor, class I family member (sri-38) [Caenorhabditis elegans] gb|AAB66069.2| Serpentine receptor, class i protein 38 [Caenorhabditis elegans] 6.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.1E-74
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.3E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494323.2 7 10-32,45-64,91-113,134-156,189-211,241-263,273-295
F22E5.4 7 10-32,45-64,91-113,134-156,189-211,241-263,273-295
GENEFINDER00000023624 9 10-32,45-64,91-113,134-156,189-211,241-263,273-295,405-427,437-456
Sequence
Target Sequence 
>C. ELEGANS:180120_AT
ttatttcaacattgcctctcattgttttgatatttatctcggtttcacaaattggactgt
caaaggaaaaatcgctagagtttgccaaaataaactaccctgaatacgctgttcaattct
ctaaaatctcgaacctcatgttcttcgattcaaatctctggttgacgggtgttctgttca
tatctggttttggcggatgtttattgggagccatagttaccatgacaacgcttgacatgt
tcaagatgctcggcgagctgcgacgaaaagtctcgtttaaaaactttgcacgtcatcggg
cagtggtgaggagtcttctggcccaatgtgcagctactgcgatccttttgcttccaggag
ccgcgatttttgcgatttttctgtatcccgatgaaaagtcacgagaaatcagtcaaatca
tagtatgcatttatgcactccgatcgtctgcaagttctgtaattctagtgataactacgc
caccttaccgggcatatatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTTCAACATTGCCTCTCATTGT 636 677 293 Antisense
AAACTACCCTGAATACGCTGTTCAA 349 127 384 Antisense
AAAATCTCGAACCTCATGTTCTTCG 697 133 415 Antisense
AAATCTCTGGTTGACGGGTGTTCTG 10 115 444 Antisense
GTTCTGTTCATATCTGGTTTTGGCG 390 443 463 Antisense
GGAGCCATAGTTACCATGACAACGC 274 521 499 Antisense
AACTTTGCACGTCATCGGGCAGTGG 625 139 574 Antisense
CAGTGGTGAGGAGTCTTCTGGCCCA 25 209 593 Antisense
TTATGCACTCCGATCGTCTGCAAGT 393 681 723 Antisense
CTAGTGATAACTACGCCACCTTACC 603 223 757 Antisense
ACGCCACCTTACCGGGCATATATCA 85 91 769 Antisense
Sequence Source Affymetrix Proprietary Database