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[180119_at]

Description F47B10.6 /REP_DB=WormBase Gene ID /WP=CE03356 /TR=Q20506 /GB=CAA91986.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 9.4
(-1.1)
A 		26.3
(3)
A 		1.8
(-3)
A 		12.8
(-0.3)
A 		25
B 2.7
(-2.7)
A 		20.9
(3)
A 		1.6
(-3)
A 		5.6
(-1.8)
A 		19
C 20.3
(-1.1)
A 		20
(-1.1)
A 		1.2
(-3)
A 		61.5
(3)
A 		60
avr 10.8
(-0.8) 		22.4
(2) 		1.5
(-3) 		26.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 1.6
(-3)
A 		3.5
(-2.7)
A 		41.5
(3)
A 		26
(0.7)
A 		12.4
(-1.4)
A 		1.8
(-3)
A 		40
B 0.8
(-3)
A 		19.5
(2.3)
A 		21.8
(3)
A 		3.2
(-2.3)
A 		3
(-2.4)
A 		7.5
(-1.1)
A 		21
C 1.1
(-3)
A 		1.8
(-0.5)
A 		1.1
(-3)
A 		1.5
(-1.6)
A 		2.8
(3)
A 		2.4
(1.6)
A 		2
avr 1.2
(-3) 		8.3
(-0.9) 		21.5
(3) 		10.2
(-0.3) 		6.1
(-1.6) 		3.9
(-2.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.4
(0.3)
A 		5.7
(3)
A 		0.5
(-3)
A 		1.9
(-1.4)
A 		5
B 0.9
(-2.4)
A 		5.2
(3)
A 		0.4
(-3)
A 		1.2
(-2)
A 		5
C 6.7
(0.8)
A 		5.8
(0.2)
A 		0.4
(-3)
A 		10.4
(3)
A 		10
avr 3.7
(0.8) 		5.6
(3) 		0.4
(-3) 		4.5
(1.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1.2
(-2.4)
A 		9
(3)
A 		6.6
(1.3)
A 		3.8
(-0.6)
A 		0.4
(-2.9)
A 		9
B 0.3
(-3)
A 		6.5
(3)
A 		5.3
(1.8)
A 		0.9
(-2.4)
A 		1.2
(-2.1)
A 		2.8
(-0.6)
A 		6
C 0.4
(-2)
A 		0.6
(-0)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.9
(3)
A 		0.8
(2)
A 		1
avr 0.3
(-3) 		2.8
(0.3) 		4.9
(3) 		2.6
(0) 		2
(-0.8) 		1.3
(-1.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16011
Sequence Type Exemplar sequence
Representative Public ID F47B10.6 NCBI
Target Description F47B10.6 /REP_DB=WormBase Gene ID /WP=CE03356 /TR=Q20506 /GB=CAA91986.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077415 NCBI Caenorhabditis elegans F47B10.6 (F47B10.6) mRNA, complete cds. 11/11 None
SNAP00000040442 ENSEMBL cdna:SNAP chromosome:CEL140:X:10888429:10888951:1 10/11 None
F47B10.6 ENSEMBL cdna:known chromosome:CEL140:X:10888429:10888818:1 gene:F47B10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10888428-10888818(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B10.6
Entrez Gene 185905 Entrez gene
SwissProt Q20506 EMBL-EBI
WormBase CE03356 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91986 Hypothetical protein F47B10.6 [Caenorhabditis elegans] ref|NP_509816.1| F47B10.6 [Caenorhabditis elegans] 2.0E-59
blast CAA91986 Hypothetical protein F47B10.6 [Caenorhabditis elegans] ref|NP_509816.1| F47B10.6 [Caenorhabditis elegans] 4.0E-41
blast CAE70803 Hypothetical protein CBG17564 [Caenorhabditis briggsae] 7.0E-24
blast CAE70803 Hypothetical protein CBG17564 [Caenorhabditis briggsae] 5.0E-18
Sequence
Target Sequence 
>C. ELEGANS:180119_AT
gatgatctcactggtatgctcaatctaattagccatgagaagcatatccagcatttagat
gatttggtcacaagatatcgcgaacttgtttgccaactgtgcaccgtcattgaaatggag
tgcatgtccgaacaggaatacattcttgaaatttatgatgaagcttttggaaccggccaa
cgcgtcattaacaacgagtttccgttagcgactactagtgaggagtttgtggttagtcaa
agaaaacagttgaacgcttatataaatataataaactttcactcaatttccttgtacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATCTCACTGGTATGCTCAATC 406 411 28 Antisense
GTATGCTCAATCTAATTAGCCATGA 263 455 41 Antisense
AGCCATGAGAAGCATATCCAGCATT 189 83 58 Antisense
ATTTGGTCACAAGATATCGCGAACT 250 19 89 Antisense
ATCGCGAACTTGTTTGCCAACTGTG 361 35 104 Antisense
GCCAACTGTGCACCGTCATTGAAAT 77 279 119 Antisense
AATGGAGTGCATGTCCGAACAGGAA 371 163 141 Antisense
TGAAGCTTTTGGAACCGGCCAACGC 2 573 186 Antisense
CCGGCCAACGCGTCATTAACAACGA 71 265 200 Antisense
ACGAGTTTCCGTTAGCGACTACTAG 560 93 221 Antisense
ACTTTCACTCAATTTCCTTGTACCT 35 103 302 Antisense
Sequence Source Affymetrix Proprietary Database