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[180118_at]

Description C36C9.3 /REP_DB=WormBase Gene ID /WP=CE19722 /TR=Q9TZK9 /GB=AAC67423.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 3.8
(-3)
A 		39.4
(1.5)
A 		51.8
(3)
A 		37.2
(1.2)
A 		48
B 27.4
(-1.4)
A 		34.3
(1.4)
A 		23.4
(-3)
A 		38.2
(3)
A 		15
C 10.5
(-3)
A 		36.3
(0.4)
A 		28.9
(-0.6)
A 		56.6
(3)
A 		46
avr 13.9
(-3) 		36.7
(1.5) 		34.7
(1.1) 		44
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 85
(3)
M 		18.4
(-1.9)
A 		37.2
(-0.5)
A 		4
(-3)
A 		60.9
(1.2)
A 		43.7
(-0.1)
P 		81
B 35.8
(-0.4)
A 		8.6
(-2.7)
A 		5.1
(-3)
A 		27.1
(-1.2)
A 		44.8
(0.3)
P 		77.2
(3)
P 		72
C 21.2
(-1.5)
P 		35.7
(0.3)
P 		27.1
(-0.7)
A 		8.9
(-3)
A 		46.5
(1.7)
A 		57.4
(3)
P 		49
avr 47.3
(1.4) 		20.9
(-2) 		23.1
(-1.7) 		13.3
(-3) 		50.7
(1.9) 		59.4
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.4
(-3)
A 		8.6
(0.6)
A 		13.5
(3)
A 		5.4
(-1)
A 		12
B 8.7
(3)
A 		8.5
(2.6)
A 		5.4
(-3)
A 		8.1
(1.9)
A 		3
C 3.5
(-3)
A 		10.4
(3)
A 		10.1
(2.7)
A 		9.5
(2.2)
A 		7
avr 4.5
(-3) 		9.2
(2.4) 		9.7
(3) 		7.7
(0.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 15.7
(2.1)
M 		6.6
(-1.1)
A 		8.1
(-0.6)
A 		1
(-3)
A 		18.4
(3)
A 		10.6
(0.3)
P 		17
B 12.5
(-0.5)
A 		2.8
(-2.7)
A 		1.2
(-3)
A 		7.2
(-1.7)
A 		18.2
(0.7)
P 		28.8
(3)
P 		28
C 7.8
(-0.9)
P 		10.9
(0.1)
P 		6.9
(-1.2)
A 		1.8
(-3)
A 		15
(1.6)
A 		19.2
(3)
P 		17
avr 12
(0.2) 		6.8
(-1.7) 		5.4
(-2.2) 		3.3
(-3) 		17.2
(2.1) 		19.5
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180118_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18091
Sequence Type Exemplar sequence
Representative Public ID C36C9.3 NCBI
Target Description C36C9.3 /REP_DB=WormBase Gene ID /WP=CE19722 /TR=Q9TZK9 /GB=AAC67423.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075908(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075908 NCBI Caenorhabditis elegans C36C9.3 (C36C9.3) mRNA, complete cds. 11/11 None
SNAP00000005671 ENSEMBL cdna:SNAP chromosome:CEL140:X:1676492:1678102:-1 11/11 None
GENEFINDER00000005683 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1676492:1678102:-1 11/11 None
C36C9.3 ENSEMBL cdna:known chromosome:CEL140:X:1676492:1678102:-1 gene:C36C9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1676491-1678102(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36C9.3
Entrez Gene 183273 Entrez gene
SwissProt Q9TZK9 EMBL-EBI
WormBase CE19722 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508309 C36C9.3 [Caenorhabditis elegans] gb|AAC67423.1| Hypothetical protein C36C9.3 [Caenorhabditis elegans] 0.0
blast AAB66190 Hypothetical protein T07D3.1 [Caenorhabditis elegans] ref|NP_493845.2| T07D3.1 [Caenorhabditis elegans] 4.0E-60
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 1.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.2E-44
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-7
Sequence
Target Sequence 
>C. ELEGANS:180118_AT
cgatcagcgattatgcctcactattggagatcttccctgctggaaaattggaatcactca
atatcgatccctacactttcgatcgcgcggaacttgaaaccctcgagcattgtgagcatc
tttcaagcatggaccaatggaagatggctgagaggttttttggtagaggcttcagtttgg
atgtcccaattggaagcttcttccattttaaattattcgacgtcgtgctacgggagttca
ccgaagaagacgctgtgaaacttcgagacatgattgatgaatcttccgatttcataagcg
ctgatatcactagcagagtcatggacctaccaagtgttgcgaatgtttttggacttatct
ttgtcgctaatgaagaggaagacgagcaagcatttgattatttcactccagccaatgcga
agtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATCAGCGATTATGCCTCACTATT 305 249 734 Antisense
GGAATCACTCAATATCGATCCCTAC 93 533 783 Antisense
TCGATCGCGCGGAACTTGAAACCCT 473 601 812 Antisense
GAAACCCTCGAGCATTGTGAGCATC 544 357 829 Antisense
GTGAGCATCTTTCAAGCATGGACCA 109 483 845 Antisense
TAGAGGCTTCAGTTTGGATGTCCCA 381 653 897 Antisense
GATGTCCCAATTGGAAGCTTCTTCC 357 407 913 Antisense
TCGACGTCGTGCTACGGGAGTTCAC 264 601 950 Antisense
GAATCTTCCGATTTCATAAGCGCTG 692 327 1012 Antisense
GAGTCATGGACCTACCAAGTGTTGC 505 399 1049 Antisense
ATTTCACTCCAGCCAATGCGAAGTT 605 15 1133 Antisense
Sequence Source Affymetrix Proprietary Database