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[180115_at]

Description C30G4.4 /REP_DB=WormBase Gene ID /WP=CE06900 /TR=Q18333 /GB=AAA93423.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 96      4grp_high_8_8 > 12      6grp_total > 97      4grp_total > 11      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 448
1 2 3 4 range
A 293.5
(-2.1)
P 		293.1
(-2.2)
A 		244
(-3)
P 		590.8
(3)
P 		347
B 302.2
(-1.8)
P 		328.9
(-1.3)
P 		229.3
(-3)
P 		589.1
(3)
P 		360
C 348.5
(-0.6)
P 		282.4
(-1.5)
P 		169.9
(-3)
P 		617.6
(3)
P 		448
avr 314.7
(-1.4) 		301.5
(-1.6) 		214.4
(-3) 		599.2
(3) 		385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 114
(-3)
A 		186.2
(3)
P 		139.1
(-0.9)
P 		167.8
(1.5)
P 		168.4
(1.5)
P 		186.3
(3)
P 		72
B 168.9
(0.7)
P 		116.3
(-3)
P 		201
(3)
P 		146.4
(-0.9)
P 		171.7
(0.9)
P 		160.4
(0.1)
P 		85
C 132.3
(-2)
P 		114.5
(-3)
P 		151.5
(-0.9)
P 		131
(-2.1)
A 		172.4
(0.3)
P 		219
(3)
P 		105
avr 138.4
(-3) 		139
(-2.9) 		163.9
(0) 		148.4
(-1.8) 		170.8
(0.9) 		188.6
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 106.9
(3)
P 		63.6
(-3)
A 		63.8
(-3)
P 		86.5
(0.2)
P 		43
B 96.4
(0.6)
P 		81.2
(-0.7)
P 		53.1
(-3)
P 		125.5
(3)
P 		72
C 115.4
(3)
P 		81.2
(-0.7)
P 		59.2
(-3)
P 		104.1
(1.8)
P 		56
avr 106.2
(3) 		75.3
(-0.9) 		58.7
(-3) 		105.4
(2.9) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 21
(-3)
A 		66.2
(3)
P 		30.3
(-1.8)
P 		42.6
(-0.1)
P 		50.8
(1)
P 		45.4
(0.2)
P 		45
B 58.8
(0.9)
P 		38.7
(-3)
P 		48.8
(-1.1)
P 		38.8
(-3)
P 		69.8
(3)
P 		59.8
(1.1)
P 		31
C 49
(-0.1)
P 		34.9
(-1.9)
P 		38.6
(-1.4)
P 		26.3
(-3)
A 		55.8
(0.8)
P 		73.3
(3)
P 		47
avr 42.9
(-1.2) 		46.6
(-0.3) 		39.2
(-2.2) 		35.9
(-3) 		58.8
(2.8) 		59.5
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180115_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17961
Sequence Type Exemplar sequence
Representative Public ID C30G4.4 NCBI
Target Description C30G4.4 /REP_DB=WormBase Gene ID /WP=CE06900 /TR=Q18333 /GB=AAA93423.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029266, NM_001029267
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029267 NCBI Caenorhabditis elegans C30G4.4b (C30G4.4) mRNA, complete cds. None
C30G4.4b ENSEMBL cdna:known chromosome:CEL140:X:17059181:17066760:-1 gene:C30G4.4 None
C30G4.4a ENSEMBL cdna:known chromosome:CEL140:X:17065015:17066768:-1 gene:C30G4.4 None
NM_001029266 NCBI Caenorhabditis elegans C30G4.4a (C30G4.4) mRNA, complete cds. None
GENEFINDER00000042127 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17065015:17072094:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042121 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17065867-17067040(-) 100.0 100.0
Public Domain and Genome References
Ensembl C30G4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05586 Hypothetical protein C30G4.4b [Caenorhabditis elegans] ref|NP_001024438.1| C30G4.4b [Caenorhabditis elegans] 6.0E-86
blast CAE69712 Hypothetical protein CBG15981 [Caenorhabditis briggsae] 5.0E-82
blast T15722 hypothetical protein C30G4.4 - Caenorhabditis elegans 3.0E-52
blast AAU05585 Hypothetical protein C30G4.4a [Caenorhabditis elegans] ref|NP_001024437.1| C30G4.4a [Caenorhabditis elegans] 3.0E-49
blast AAU05585 Hypothetical protein C30G4.4a [Caenorhabditis elegans] ref|NP_001024437.1| C30G4.4a [Caenorhabditis elegans] 1.0E-48
blast AAU05586 Hypothetical protein C30G4.4b [Caenorhabditis elegans] ref|NP_001024438.1| C30G4.4b [Caenorhabditis elegans] 1.0E-41
blast AAU05585 Hypothetical protein C30G4.4a [Caenorhabditis elegans] ref|NP_001024437.1| C30G4.4a [Caenorhabditis elegans] 3.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024438.1 1 177-191
C30G4.4b 1 177-191
Sequence
Target Sequence 
>C. ELEGANS:180115_AT
ttaatagcgagttcttcttccatatttcttcaccttcctcttgcctcttgttccgtgact
acgacctttcttgtttctgaaaaaccactgagattttgcaaatccgtggacttccggcca
ctccgaagagaggctccaaatttgacgggtgatagctgcagtactctgccaagtactccg
gtccacaaaaagaatccaccgcttccgacgatgtcgtccggtggatcacgcttcaaggtg
gttccagttgaaacacggtataaaagggatagatggacttgtgttgattattatgattct
ctcagggacccgtacttcagtcccaatggaaagcacgccattgccaagccgaccgccgcg
atcaaaagtaggccagctttttattccttatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATAGCGAGTTCTTCTTCCATAT 415 683 22 Antisense
TTGCAAATCCGTGGACTTCCGGCCA 625 653 117 Antisense
TTCCGGCCACTCCGAAGAGAGGCTC 207 699 133 Antisense
GACGGGTGATAGCTGCAGTACTCTG 386 377 165 Antisense
CAGTACTCTGCCAAGTACTCCGGTC 223 205 180 Antisense
CCGACGATGTCGTCCGGTGGATCAC 706 259 226 Antisense
GGATCACGCTTCAAGGTGGTTCCAG 525 511 244 Antisense
CTCAGGGACCCGTACTTCAGTCCCA 10 223 322 Antisense
ATGGAAAGCACGCCATTGCCAAGCC 223 53 347 Antisense
GCCGACCGCCGCGATCAAAAGTAGG 244 283 369 Antisense
GTAGGCCAGCTTTTTATTCCTTATT 175 455 389 Antisense
Sequence Source Affymetrix Proprietary Database