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[180114_at]

Description K04G11.1 /REP_DB=WormBase Gene ID /WP=CE11742 /TR=Q93848 /GB=CAB01761.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 35.4
(1.5)
A 		8.3
(-3)
A 		12.6
(-2.3)
A 		44.7
(3)
A 		36
B 7.4
(-3)
A 		43
(3)
A 		9.9
(-2.6)
A 		8
(-2.9)
A 		36
C 12.1
(-1.3)
A 		7.5
(-2.3)
A 		4.7
(-3)
A 		30.2
(3)
A 		26
avr 18.3
(-0) 		19.6
(0.4) 		9.1
(-3) 		27.6
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 13.6
(-1.2)
A 		9.4
(-2.2)
A 		30.7
(3)
A 		9.3
(-2.2)
A 		6
(-3)
A 		15.9
(-0.6)
A 		25
B 16.7
(0.1)
A 		30.5
(3)
A 		6.5
(-2.1)
A 		18.6
(0.5)
A 		4.4
(-2.5)
A 		2
(-3)
A 		29
C 26.2
(-0.2)
A 		43.4
(1.9)
A 		52.9
(3)
A 		8.8
(-2.3)
A 		3.1
(-3)
A 		19.2
(-1.1)
A 		50
avr 18.8
(0.4) 		27.8
(2.5) 		30
(3) 		12.2
(-1.2) 		4.5
(-3) 		12.4
(-1.1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.9
(3)
A 		1.8
(-3)
A 		3.3
(-2.2)
A 		6.5
(-0.5)
A 		11
B 2.4
(-2.5)
A 		10.6
(3)
A 		2.3
(-2.6)
A 		1.7
(-3)
A 		9
C 4
(1.1)
A 		2.2
(-2.1)
A 		1.7
(-3)
A 		5.1
(3)
A 		3
avr 6.4
(3) 		4.9
(0.8) 		2.4
(-3) 		4.4
(0) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.5
(-2.1)
A 		3.4
(-1)
A 		6.7
(3)
A 		2.4
(-2.3)
A 		1.8
(-3)
A 		3.9
(-0.4)
A 		5
B 5.8
(0.3)
A 		10.1
(3)
A 		1.6
(-2.4)
A 		4.9
(-0.3)
A 		1.8
(-2.3)
A 		0.7
(-3)
A 		9
C 9.7
(1.2)
A 		13.2
(2.9)
A 		13.5
(3)
A 		1.8
(-2.6)
A 		1
(-3)
A 		6.4
(-0.4)
A 		13
avr 6
(0.6) 		8.9
(3) 		7.3
(1.7) 		3
(-1.8) 		1.5
(-3) 		3.7
(-1.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180114_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17920
Sequence Type Exemplar sequence
Representative Public ID K04G11.1 NCBI
Target Description K04G11.1 /REP_DB=WormBase Gene ID /WP=CE11742 /TR=Q93848 /GB=CAB01761.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077990(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077990 NCBI Caenorhabditis elegans K04G11.1 (K04G11.1) mRNA, complete cds. 11/11 None
K04G11.1 ENSEMBL cdna:known chromosome:CEL140:X:14335417:14336576:1 gene:K04G11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14335416-14336576(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04G11.1
Entrez Gene 187009 Entrez gene
SwissProt Q93848 EMBL-EBI
WormBase CE11742 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01761 Hypothetical protein K04G11.1 [Caenorhabditis elegans] ref|NP_510391.1| K04G11.1 [Caenorhabditis elegans] 1.0E-110
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510391.1 1 134-156
K04G11.1 1 134-156
Sequence
Target Sequence 
>C. ELEGANS:180114_AT
gattccttgttacatgggctttcaactttttttttcaattcaacacgttccctcatcaaa
actcttgattcattgccacaaaaactatatgtacacctgcatgacaacacaaacacatgg
aaggtgcagcattccgcgcggaaaaagaaaacacaaagttgtgtctgccgaccgtataaa
acgagaagtcttgcgcaacagcacccccccccccccccacctattgagaaaaagaacgaa
agctcaatgggtgcggaaagctggcaaaaaaaaaattttgtgtgcaaatttgatattgaa
tatatgtgttttttaactttgaaaactacaaatttgtatcaaaaacttcaaggaatctac
attgaacttctgctccttcccctgctccccctcgcaacagttctctcatttctttttatg
caaattcgagctctcgttaaaaatattttgaagagcacaagtcagcgctctcgcgcgatt
tctgtttcacttttcttttctcgcgagcaaaaacaggtactcgttctgtttcgctgcgtc
tcttgccacacactgatttgtttgctctttactcgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCCTTGTTACATGGGCTTTCAA 229 429 61 Antisense
TTTTTCAATTCAACACGTTCCCTCA 559 673 91 Antisense
CATGGAAGGTGCAGCATTCCGCGCG 411 209 176 Antisense
AAAGTTGTGTCTGCCGACCGTATAA 683 119 215 Antisense
CGAGAAGTCTTGCGCAACAGCACCC 270 251 242 Antisense
AATCTACATTGAACTTCTGCTCCTT 140 171 414 Antisense
CAACAGTTCTCTCATTTCTTTTTAT 285 189 455 Antisense
GAAGAGCACAAGTCAGCGCTCTCGC 257 339 510 Antisense
AACAGGTACTCGTTCTGTTTCGCTG 415 137 572 Antisense
TCTCTTGCCACACACTGATTTGTTT 321 613 599 Antisense
TGATTTGTTTGCTCTTTACTCGTAA 581 563 614 Antisense
Sequence Source Affymetrix Proprietary Database