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[180113_at]

Description F07E5.9 /REP_DB=WormBase Gene ID /WP=CE09221 /TR=P91228 /GB=AAB37908.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 10.9
(-3)
A 		12.4
(-2.6)
A 		21.1
(-0.4)
A 		34.1
(3)
A 		23
B 17.7
(2.6)
A 		18.6
(3)
A 		3.7
(-3)
A 		14.7
(1.4)
A 		15
C 15.6
(-2.4)
A 		6.7
(-3)
A 		8.2
(-2.9)
A 		90.8
(3)
A 		84
avr 14.7
(-2.4) 		12.6
(-2.7) 		11
(-3) 		46.5
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 14.3
(-2.6)
A 		10.9
(-3)
A 		25.3
(-1.3)
A 		63
(3)
A 		20.2
(-1.9)
A 		60.3
(2.7)
A 		52
B 18.2
(-1.8)
A 		27.9
(0.1)
A 		12.4
(-3)
A 		13.6
(-2.8)
A 		21.2
(-1.2)
A 		42.4
(3)
A 		30
C 12.6
(-3)
A 		51.1
(1.8)
A 		21.2
(-1.9)
A 		60.5
(3)
A 		18.9
(-2.2)
A 		15.2
(-2.7)
A 		48
avr 15
(-3) 		30
(-0.1) 		19.6
(-2.1) 		45.7
(3) 		20.1
(-2) 		39.3
(1.7) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4
(-0.2)
A 		2.7
(-3)
A 		5.5
(3)
A 		5
(1.9)
A 		3
B 5.6
(3)
A 		4.6
(1.7)
A 		0.9
(-3)
A 		3.1
(-0.2)
A 		5
C 5.2
(-1.5)
A 		1.9
(-3)
A 		2.9
(-2.6)
A 		15.3
(3)
A 		13
avr 4.9
(-0.7) 		3.1
(-3) 		3.1
(-3) 		7.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.6
(-3)
A 		3.9
(-2.4)
A 		5.5
(-1.7)
A 		16
(3)
A 		6.1
(-1.4)
A 		14.7
(2.4)
A 		13
B 6.3
(-1.5)
A 		9.3
(-0)
A 		3
(-3)
A 		3.6
(-2.7)
A 		8.6
(-0.4)
A 		15.8
(3)
A 		13
C 4.7
(-3)
A 		15.6
(3)
A 		5.4
(-2.6)
A 		12.2
(1.1)
A 		6.1
(-2.2)
A 		5.1
(-2.8)
A 		11
avr 4.5
(-3) 		9.6
(1.1) 		4.6
(-2.9) 		10.6
(1.9) 		6.9
(-1.1) 		11.9
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180113_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4365
Sequence Type Exemplar sequence
Representative Public ID F07E5.9 NCBI
Target Description F07E5.9 /REP_DB=WormBase Gene ID /WP=CE09221 /TR=P91228 /GB=AAB37908.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061772 NCBI Caenorhabditis elegans F07E5.9 (F07E5.9) mRNA, complete cds. 11/11 None
GENEFINDER00000023377 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2076292:2079279:-1 11/11 None
F07E5.9 ENSEMBL cdna:known chromosome:CEL140:II:2076292:2079407:-1 gene:F07E5.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023370 4/11 Cross Hyb Matching Probes None
SNAP00000023371 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2076290-2079406(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07E5.9
Entrez Gene 184146 Entrez gene
SwissProt P91228 EMBL-EBI
WormBase CE09221 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37908 Hypothetical protein F07E5.9 [Caenorhabditis elegans] ref|NP_494173.1| F07E5.9 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180113_AT
ggtcggactaagacgcagaaccgccgttcaaagaaatctccaaataacaagatcccagcc
atgcataagagaagacagaagtcggcaaaaccggcagtttcggttgacgaaaaacatgaa
aagcagaaagagaaaaattgtggttactcaaaaaagcactattgggacaaaaaagaagaa
aagccacatttagaaacattggagtacatcttttctttagtggagccgaacaataaaaaa
aggtttgaagttgtacggaggatggtgtggatgctaaagaaaaacaccgaaccaaaacct
gaagacgatatttctcccatactgattgattggattgtagccataattaaaaagatcaag
ggatacaaaaagtttggcacagtagcagaacttcttgaggctcttgagaaagagatgaac
ggtgctgtaacaaaatttgagcataccaaaaagaacccctctcctatcaaaggaacatgc
ggatcacaaaaaaatcgtaccacaatggcgagtgacctcaaatcgctcagatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCGGACTAAGACGCAGAACCGCC 456 501 631 Antisense
GAACCGCCGTTCAAAGAAATCTCCA 629 343 648 Antisense
ATAACAAGATCCCAGCCATGCATAA 315 25 674 Antisense
GAAGTCGGCAAAACCGGCAGTTTCG 249 321 708 Antisense
GTACATCTTTTCTTTAGTGGAGCCG 106 459 834 Antisense
GAAGACGATATTTCTCCCATACTGA 565 339 931 Antisense
GTTTGGCACAGTAGCAGAACTTCTT 61 453 1002 Antisense
GAGCATACCAAAAAGAACCCCTCTC 244 389 1069 Antisense
GAACCCCTCTCCTATCAAAGGAACA 638 343 1083 Antisense
TCGTACCACAATGGCGAGTGACCTC 28 605 1125 Antisense
GAGTGACCTCAAATCGCTCAGATAT 529 401 1140 Antisense
Sequence Source Affymetrix Proprietary Database