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[180112_at]

Description C10E2.4 /REP_DB=WormBase Gene ID /WP=CE08063 /TR=O17325 /GB=AAB71244.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 38      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 96.7
(3)
A 		15.7
(-2.7)
A 		36
(-1.3)
A 		11.1
(-3)
A 		86
B 73.7
(3)
A 		36.2
(-0.4)
A 		7.4
(-3)
A 		25
(-1.4)
A 		66
C 113.7
(3)
A 		38
(-1.2)
A 		6
(-3)
A 		79.9
(1.1)
A 		108
avr 94.7
(3) 		30
(-2) 		16.5
(-3) 		38.7
(-1.3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 57.1
(2.8)
A 		10.5
(-3)
A 		52.4
(2.2)
A 		21.5
(-1.6)
A 		58.4
(3)
A 		32.3
(-0.3)
A 		48
B 110.2
(3)
A 		88.8
(1.6)
A 		18.1
(-3)
A 		69.5
(0.3)
A 		71.2
(0.5)
A 		66.9
(0.2)
A 		92
C 105.3
(3)
A 		73.9
(1.1)
A 		16.2
(-2.4)
A 		12.6
(-2.6)
A 		6.1
(-3)
A 		75
(1.2)
A 		99
avr 90.9
(3) 		57.7
(-0.2) 		28.9
(-3) 		34.5
(-2.5) 		45.2
(-1.4) 		58.1
(-0.2) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 35.2
(3)
A 		3.4
(-2.7)
A 		9.4
(-1.6)
A 		1.6
(-3)
A 		34
B 23.5
(3)
A 		8.9
(-1)
A 		1.7
(-3)
A 		5.3
(-2)
A 		22
C 37.6
(3)
A 		10.9
(-1.5)
A 		2.1
(-3)
A 		13.5
(-1.1)
A 		36
avr 32.1
(3) 		7.7
(-2.3) 		4.4
(-3) 		6.8
(-2.5) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 10.5
(-0.1)
A 		3.7
(-3)
A 		11.4
(0.3)
A 		5.4
(-2.3)
A 		17.6
(3)
A 		7.9
(-1.2)
A 		14
B 38.3
(3)
A 		29.5
(1.4)
A 		4.4
(-3)
A 		18.4
(-0.5)
A 		28.9
(1.3)
A 		25
(0.6)
A 		34
C 39
(3)
A 		22.5
(0.3)
A 		4.1
(-2.7)
A 		2.5
(-2.9)
A 		2
(-3)
A 		25.1
(0.7)
A 		37
avr 29.3
(3) 		18.6
(0.2) 		6.6
(-3) 		8.8
(-2.4) 		16.2
(-0.5) 		19.3
(0.4) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180112_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17918
Sequence Type Exemplar sequence
Representative Public ID C10E2.4 NCBI
Target Description C10E2.4 /REP_DB=WormBase Gene ID /WP=CE08063 /TR=O17325 /GB=AAB71244.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078301(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078301 NCBI Caenorhabditis elegans C10E2.4 (C10E2.4) mRNA, complete cds. 11/11 None
GENEFINDER00000026951 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16749668:16762851:-1 11/11 None
SNAP00000026945 ENSEMBL cdna:SNAP chromosome:CEL140:X:16750552:16751863:-1 10/11 None
C10E2.4 ENSEMBL cdna:known chromosome:CEL140:X:16749668:16751023:-1 gene:C10E2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16749667-16751023(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10E2.4
Entrez Gene 182498 Entrez gene
SwissProt O17325 EMBL-EBI
WormBase CE08063 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71244 Hypothetical protein C10E2.4 [Caenorhabditis elegans] ref|NP_510702.1| C10E2.4 [Caenorhabditis elegans] 8.0E-79
blast AAB71244 Hypothetical protein C10E2.4 [Caenorhabditis elegans] ref|NP_510702.1| C10E2.4 [Caenorhabditis elegans] 1.0E-77
blast CAE69943 Hypothetical protein CBG16326 [Caenorhabditis briggsae] 7.0E-73
blast CAE69943 Hypothetical protein CBG16326 [Caenorhabditis briggsae] 9.0E-72
blast AAB71244 Hypothetical protein C10E2.4 [Caenorhabditis elegans] ref|NP_510702.1| C10E2.4 [Caenorhabditis elegans] 1.0E-54
blast CAE69943 Hypothetical protein CBG16326 [Caenorhabditis briggsae] 2.0E-49
blast AAB71240 Hypothetical protein C10E2.5 [Caenorhabditis elegans] ref|NP_510703.2| C10E2.5 [Caenorhabditis elegans] 1.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000026951 3 241-258,369-391,396-418
Sequence
Target Sequence 
>C. ELEGANS:180112_AT
gaacctcagtgatccatacagcaccagcatgtcagtcggttttggattcagaaggtgata
ctgaatcgacaaggcccacaccaacaccgagacgatccagaaactcggcagaagagcagt
ggctggctcatggtgaaaaatggcaaaatgagcagttgcggttatccatggaacgggaaa
acccgcactttttggtttttccatacagtgaggcttcacctcatcgggagtctatgaata
atatggatgcgttggtgcatgagttttccaggatagacagcattaaacggccacactgct
tcacaaagcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCTCAGTGATCCATACAGCACC 157 347 68 Antisense
CATACAGCACCAGCATGTCAGTCGG 311 213 82 Antisense
GCATGTCAGTCGGTTTTGGATTCAG 343 311 94 Antisense
CACCAACACCGAGACGATCCAGAAA 537 201 146 Antisense
AGCAGTGGCTGGCTCATGGTGAAAA 638 75 182 Antisense
GAGCAGTTGCGGTTATCCATGGAAC 515 389 217 Antisense
GTTTTTCCATACAGTGAGGCTTCAC 274 447 262 Antisense
TGAGGCTTCACCTCATCGGGAGTCT 73 567 276 Antisense
GGTGCATGAGTTTTCCAGGATAGAC 383 501 321 Antisense
GATAGACAGCATTAAACGGCCACAC 598 423 339 Antisense
CGGCCACACTGCTTCACAAAGCAAC 19 243 355 Antisense
Sequence Source Affymetrix Proprietary Database