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[180111_at]

Description H40L08.3 /REP_DB=WormBase Gene ID /WP=CE16189 /TR=O45629 /GB=CAB08562.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 2.4
(-3)
A 		3.3
(-2.9)
A 		8.5
(-2.1)
A 		44.7
(3)
A 		42
B 2.9
(-3)
A 		6.5
(0.7)
A 		5.2
(-0.6)
A 		8.7
(3)
A 		6
C 7.2
(3)
A 		4.7
(-1.2)
A 		3.6
(-3)
A 		4.8
(-1)
A 		4
avr 4.2
(-3) 		4.8
(-2.8) 		5.8
(-2.4) 		19.4
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 25.6
(3)
A 		5.6
(-2.1)
A 		2.6
(-2.8)
A 		1.9
(-3)
A 		9
(-1.2)
A 		8.1
(-1.4)
A 		24
B 2.5
(-2.7)
A 		23.2
(3)
A 		3.2
(-2.5)
A 		5.3
(-1.9)
A 		1.4
(-3)
A 		2.9
(-2.6)
A 		22
C 3.2
(-2.7)
A 		8.6
(-1.6)
A 		7.1
(-1.9)
A 		31.6
(3)
A 		1.6
(-3)
A 		5.8
(-2.2)
A 		30
avr 10.4
(1.3) 		12.5
(2.7) 		4.3
(-2.8) 		12.9
(3) 		4
(-3) 		5.6
(-1.9) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.9
(-2.8)
A 		0.7
(-3)
A 		2.2
(-1.5)
A 		6.6
(3)
A 		6
B 0.9
(-3)
A 		1.6
(1.7)
A 		1.2
(-1)
A 		1.8
(3)
A 		1
C 2.4
(3)
A 		1.4
(-0.8)
A 		1.2
(-1.5)
A 		0.8
(-3)
A 		2
avr 1.4
(-2.4) 		1.2
(-3) 		1.5
(-2.1) 		3.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 4.7
(3)
A 		2
(-0.9)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		2.7
(0.1)
A 		2
(-0.9)
A 		4
B 0.9
(-2.7)
A 		7.7
(3)
A 		0.8
(-2.8)
A 		1.4
(-2.3)
A 		0.6
(-3)
A 		1.1
(-2.6)
A 		7
C 1.2
(-2.3)
A 		2.6
(-0.8)
A 		1.8
(-1.7)
A 		6.3
(3)
A 		0.5
(-3)
A 		1.9
(-1.6)
A 		6
avr 2.3
(-0.6) 		4.1
(3) 		1.1
(-3) 		2.7
(0.2) 		1.3
(-2.6) 		1.7
(-1.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180111_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17907
Sequence Type Exemplar sequence
Representative Public ID H40L08.3 NCBI
Target Description H40L08.3 /REP_DB=WormBase Gene ID /WP=CE16189 /TR=O45629 /GB=CAB08562.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078104(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078104 NCBI Caenorhabditis elegans H40L08.3 (H40L08.3) mRNA, complete cds. 11/11 None
GENEFINDER00000002253 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15070364:15077228:-1 11/11 None
SNAP00000002249 ENSEMBL cdna:SNAP chromosome:CEL140:X:15073009:15076008:-1 11/11 None
H40L08.3 ENSEMBL cdna:known chromosome:CEL140:X:15069659:15076396:-1 gene:H40L08.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15074650-15076008(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H40L08.3
Entrez Gene 186810 Entrez gene
SwissProt O45629 EMBL-EBI
WormBase CE37841 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB08562 Hypothetical protein H40L08.3 [Caenorhabditis elegans] emb|CAH60783.2| Hypothetical protein H40L08.3 [Caenorhabditis elegans] ref|NP_510505.2| H40L08.3 [Caenorhabditis elegans] 0.0
blast CAE63264 Hypothetical protein CBG07638 [Caenorhabditis briggsae] 0.0
blast XP_653447 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48061.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 7.0E-13
Protein Domains
Database ID Description E-Value
scop a.2.7.Methicillin resistance protein FemA probable tRNA-binding arm All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm 2.70000004768372
scop a.2.7.Methicillin resistance protein FemA probable tRNA-binding arm All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm 1.20000004768372
scop a.2.6.Effector domain of the protein kinase pkn/prk1 All alpha proteins; Long alpha-hairpin; Effector domain of the protein kinase pkn/prk1; Effector domain of the protein kinase pkn/prk1 3.5
scop a.2.6.Effector domain of the protein kinase pkn/prk1 All alpha proteins; Long alpha-hairpin; Effector domain of the protein kinase pkn/prk1; Effector domain of the protein kinase pkn/prk1 8.60000038146973
Sequence
Target Sequence 
>C. ELEGANS:180111_AT
tgaagttgctcggacgggtcactgcattatcagtgtccaatgatttttcaatttttgcgg
tagcgattgaagaggaaaatgttgcaaaagtggtagtttattcattggaattagcaattg
gcgaagagaaggcagtgtatggaacgcagtacctctcgacggaaatgtgcatttctcaag
ctgcagagataatcgcttgtttatcagtactagaagaacgagttcatttgcaaacattcg
atgtgaaagatggtatcaataattgcacagggaatattatcgctgaaaaagttcccaaaa
actggcaaatatccttttgccctgctgatgagggagttctatgtgcactcggcggcggaa
ctgcgtacttgctcagagccagtggtgggcatatagaaaacttttcgacaattttgctgc
caggtgttacttgtcacgactgggcaaacgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGTTGCTCGGACGGGTCACTGC 285 575 161 Antisense
GGGTCACTGCATTATCAGTGTCCAA 510 497 176 Antisense
AGTGTATGGAACGCAGTACCTCTCG 448 59 294 Antisense
GTACCTCTCGACGGAAATGTGCATT 521 457 309 Antisense
TAATCGCTTGTTTATCAGTACTAGA 435 635 350 Antisense
TATCCTTTTGCCCTGCTGATGAGGG 453 657 470 Antisense
TGAGGGAGTTCTATGTGCACTCGGC 474 567 489 Antisense
AACTGCGTACTTGCTCAGAGCCAGT 125 143 519 Antisense
ACTTTTCGACAATTTTGCTGCCAGG 209 103 560 Antisense
GCTGCCAGGTGTTACTTGTCACGAC 166 297 576 Antisense
ACTTGTCACGACTGGGCAAACGATG 184 3 589 Antisense
Sequence Source Affymetrix Proprietary Database