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[180110_at]

Description Y63D3A.9 /REP_DB=WormBase Gene ID /WP=CE20341 /TR=Q9XWG0 /GB=CAA21711.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.6
(-3)
A 		2
(-2.4)
A 		5.3
(3)
A 		4.3
(1.4)
A 		4
B 1.4
(-3)
A 		12.4
(3)
A 		7
(0.1)
A 		1.7
(-2.8)
A 		11
C 3.6
(-1.3)
A 		9
(2.5)
A 		1.1
(-3)
A 		9.7
(3)
A 		9
avr 2.2
(-3) 		7.8
(3) 		4.5
(-0.5) 		5.2
(0.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 6.5
(-1.5)
A 		1.1
(-3)
A 		3.8
(-2.2)
A 		7.6
(-1.2)
A 		6.7
(-1.4)
A 		22.2
(3)
A 		21
B 1
(-3)
A 		8.1
(-0.8)
A 		1.2
(-2.9)
A 		20.3
(3)
A 		1.3
(-2.9)
A 		8.2
(-0.8)
A 		19
C 5.4
(-2.4)
A 		4.5
(-2.5)
A 		1.9
(-3)
A 		34.3
(3)
A 		11.5
(-1.2)
A 		3.7
(-2.7)
A 		32
avr 4.3
(-2.3) 		4.6
(-2.3) 		2.3
(-3) 		20.7
(3) 		6.5
(-1.6) 		11.4
(-0) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.6
(-1.8)
A 		0.4
(-3)
A 		1.4
(3)
A 		0.6
(-1.8)
A 		1
B 0.5
(-2.8)
A 		3.1
(3)
A 		1.6
(-0.3)
A 		0.4
(-3)
A 		3
C 1.2
(-0.8)
A 		2.6
(3)
A 		0.4
(-3)
A 		1.6
(0.3)
A 		2
avr 0.8
(-3) 		2
(3) 		1.1
(-1.5) 		0.9
(-2.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.2
(-2)
A 		0.4
(-3)
A 		0.8
(-2.5)
A 		1.9
(-1.2)
A 		2
(-1.1)
A 		5.4
(3)
A 		5
B 0.4
(-2.9)
A 		2.7
(-0.2)
A 		0.3
(-3)
A 		5.4
(3)
A 		0.5
(-2.8)
A 		3
(0.2)
A 		5
C 2
(-1.6)
A 		1.4
(-2.2)
A 		0.5
(-3)
A 		6.9
(3)
A 		3.7
(0)
A 		1.2
(-2.3)
A 		6
avr 1.2
(-2) 		1.5
(-1.6) 		0.5
(-3) 		4.7
(3) 		2.1
(-0.7) 		3.2
(0.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.640
Sequence Type Exemplar sequence
Representative Public ID Y63D3A.9 NCBI
Target Description Y63D3A.9 /REP_DB=WormBase Gene ID /WP=CE20341 /TR=Q9XWG0 /GB=CAA21711.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061055(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061055 NCBI Caenorhabditis elegans Y63D3A.9 (Y63D3A.9) mRNA, complete cds. 11/11 None
SNAP00000002942 ENSEMBL cdna:SNAP chromosome:CEL140:I:14091166:14092316:-1 10/11 None
Y63D3A.9 ENSEMBL cdna:known chromosome:CEL140:I:14091166:14092316:-1 gene:Y63D3A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14091096-14092247(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y63D3A.9
Entrez Gene 190471 Entrez gene
SwissProt Q9XWG0 EMBL-EBI
WormBase CE20341 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21711 Hypothetical protein Y63D3A.9 [Caenorhabditis elegans] ref|NP_493456.1| Y63D3A.9 [Caenorhabditis elegans] 1.0E-158
blast CAA21711 Hypothetical protein Y63D3A.9 [Caenorhabditis elegans] ref|NP_493456.1| Y63D3A.9 [Caenorhabditis elegans] 1.0E-154
blast CAB76748 Hypothetical protein Y63D3A.11 [Caenorhabditis elegans] ref|NP_493458.1| Y63D3A.11 [Caenorhabditis elegans] 1.0E-103
blast CAB76748 Hypothetical protein Y63D3A.11 [Caenorhabditis elegans] ref|NP_493458.1| Y63D3A.11 [Caenorhabditis elegans] 5.0E-95
blast AAF35429 Hypothetical protein C52E2.1 [Caenorhabditis elegans] ref|NP_494097.1| C52E2.1 [Caenorhabditis elegans] 1.0E-53
blast AAF35429 Hypothetical protein C52E2.1 [Caenorhabditis elegans] ref|NP_494097.1| C52E2.1 [Caenorhabditis elegans] 1.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-5
Sequence
Target Sequence 
>C. ELEGANS:180110_AT
cggcctattaccagtcaaatctttgtagacggtcagcctcaagagcgtcaatgggaaatt
caaagtattacagtgaaaaagtgctttgaaaactttctggccgccttcaatcattttgaa
gttgaatatatatgtgtgagaggagaagatgacatatcttataacctggaagaaataaaa
gtggtgaagaaccttgaaattttttctgctgattgtgggatatttggtcagctctaccgt
gttgctaacaaagtaaccctttcacagaggtctcttctccatgagaaacccagagatttc
ttcacagagaacatggattcacttcaactggagaaagcagtgatctatcgcccatttacc
ctatccgatttgaatctgttccttcaacactggagaaaaggatctaatcctagactggaa
gagatttatattggactgaaagaggataatctcgtggacttcaagaaaacactactaaag
ggcattgaatattggaagtatggcatattcagagtgtataacaatagcccatctatcgaa
ggactggagattgagcggaccgatggaattcgagcgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCCTATTACCAGTCAAATCTTTG 397 241 217 Antisense
AAATCTTTGTAGACGGTCAGCCTCA 258 117 233 Antisense
GGTCAGCCTCAAGAGCGTCAATGGG 442 501 247 Antisense
GAAATTTTTTCTGCTGATTGTGGGA 519 363 412 Antisense
GATTGTGGGATATTTGGTCAGCTCT 308 435 427 Antisense
GTCAGCTCTACCGTGTTGCTAACAA 675 465 443 Antisense
GTAACCCTTTCACAGAGGTCTCTTC 116 463 469 Antisense
GAGGTCTCTTCTCCATGAGAAACCC 168 403 483 Antisense
AAACCCAGAGATTTCTTCACAGAGA 100 127 502 Antisense
AACATGGATTCACTTCAACTGGAGA 137 137 526 Antisense
GCGGACCGATGGAATTCGAGCGATC 164 293 771 Antisense
Sequence Source Affymetrix Proprietary Database