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[180109_at]

Description F10D7.4 /REP_DB=WormBase Gene ID /WP=CE04354 /TR=Q19298 /GB=AAA81722.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 35      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 50
(-3)
A 		107
(3)
A 		61.8
(-1.8)
A 		52.2
(-2.8)
A 		57
B 55.9
(0.3)
A 		89.4
(3)
A 		14.8
(-3)
A 		56.3
(0.3)
A 		75
C 54.2
(-0.4)
A 		99.5
(3)
A 		19.3
(-3)
A 		88
(2.1)
A 		80
avr 53.4
(-1.1) 		98.6
(3) 		32
(-3) 		65.5
(0) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 71.7
(1.3)
A 		94.3
(3)
A 		71.4
(1.3)
A 		17.2
(-2.7)
A 		85.9
(2.4)
A 		12.5
(-3)
A 		82
B 89.6
(3)
A 		80
(2.2)
A 		83.9
(2.5)
A 		32.3
(-2)
A 		44
(-0.9)
A 		20.3
(-3)
A 		69
C 83.9
(3)
A 		72.7
(1.7)
A 		76.5
(2.2)
A 		38.9
(-2.1)
A 		30.5
(-3)
A 		51.8
(-0.6)
A 		53
avr 81.7
(2.9) 		82.3
(3) 		77.3
(2.4) 		29.5
(-2.9) 		53.5
(-0.2) 		28.2
(-3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 18.2
(1.1)
A 		23.2
(3)
A 		16.2
(0.3)
A 		7.6
(-3)
A 		16
B 17.8
(1.6)
A 		22.1
(3)
A 		3.4
(-3)
A 		12
(-0.2)
A 		19
C 17.9
(0.1)
A 		28.6
(3)
A 		6.7
(-3)
A 		14.8
(-0.8)
A 		22
avr 18
(0.5) 		24.6
(3) 		8.8
(-3) 		11.5
(-2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 13.2
(-1)
A 		33.5
(3)
A 		15.5
(-0.5)
A 		4.4
(-2.7)
A 		25.9
(1.5)
A 		3
(-3)
A 		31
B 31.2
(3)
A 		26.6
(1.8)
A 		20.4
(0.3)
A 		8.6
(-2.7)
A 		17.9
(-0.4)
A 		7.6
(-3)
A 		24
C 31.1
(3)
A 		22.2
(0.7)
A 		19.5
(0)
A 		7.8
(-3)
A 		9.9
(-2.5)
A 		17.3
(-0.6)
A 		23
avr 25.2
(2.4) 		27.4
(3) 		18.5
(0.4) 		6.9
(-3) 		17.9
(0.2) 		9.3
(-2.3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180109_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17598
Sequence Type Exemplar sequence
Representative Public ID F10D7.4 NCBI
Target Description F10D7.4 /REP_DB=WormBase Gene ID /WP=CE04354 /TR=Q19298 /GB=AAA81722.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078415 NCBI Caenorhabditis elegans F10D7.4 (F10D7.4) mRNA, complete cds. 11/11 None
GENEFINDER00000025757 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17371806:17381730:-1 11/11 None
F10D7.4 ENSEMBL cdna:known chromosome:CEL140:X:17378543:17381005:-1 gene:F10D7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025749 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17378542-17381005(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10D7.4
Entrez Gene 184297 Entrez gene
SwissProt Q19298 EMBL-EBI
WormBase CE04354 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81722 Hypothetical protein F10D7.4 [Caenorhabditis elegans] ref|NP_510816.1| F10D7.4 [Caenorhabditis elegans] 1.0E-154
blast AAA81722 Hypothetical protein F10D7.4 [Caenorhabditis elegans] ref|NP_510816.1| F10D7.4 [Caenorhabditis elegans] 1.0E-133
blast AAA81721 Hypothetical protein F10D7.3 [Caenorhabditis elegans] ref|NP_510815.2| F10D7.3 [Caenorhabditis elegans] sp|Q19297|YZ73_CAEEL Hypothetical protein F10D7.3 in chromosome X 4.0E-51
blast T16026 hypothetical protein F10D7.3 - Caenorhabditis elegans 2.0E-50
blast CAE69681 Hypothetical protein CBG15934 [Caenorhabditis briggsae] 1.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR002109 EMBL-EBI Glutaredoxin 1.4E-22
Sequence
Target Sequence 
>C. ELEGANS:180109_AT
ccaaaggagctctcaaccttcgactaccaggagacaccgagttcttcactttttatcatg
tgccaagagactatctccatttgctctaccacggcaatgaccaacaggttgtgcaactga
attacagcaaaaccggtttagaacgaatattcgcttcagaactgacccacgacattcatt
tttgccgagcaatacgaaaagcagaaattgtgacttttgaggttacaatatatggaaaaa
ataaacgagaaggagacttcaaattgataatagaacccgtaaaatcgaaaccaactgata
agaaaagtcaaacttctttacattcttcatttatcattgaaccaccatgcgtttgggctg
gcaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAAAGGAGCTCTCAACCTTCGACT 75 271 182 Antisense
ACCTTCGACTACCAGGAGACACCGA 515 85 197 Antisense
AGACACCGAGTTCTTCACTTTTTAT 92 71 213 Antisense
TCTTCACTTTTTATCATGTGCCAAG 245 617 224 Antisense
AGAGACTATCTCCATTTGCTCTACC 577 69 247 Antisense
TGCTCTACCACGGCAATGACCAACA 113 581 263 Antisense
ATTCGCTTCAGAACTGACCCACGAC 287 7 330 Antisense
CTGACCCACGACATTCATTTTTGCC 708 237 343 Antisense
GTCAAACTTCTTTACATTCTTCATT 120 465 488 Antisense
CATTTATCATTGAACCACCATGCGT 446 215 509 Antisense
CCACCATGCGTTTGGGCTGGCAATA 626 273 523 Antisense
Sequence Source Affymetrix Proprietary Database