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[180108_at]

Description ZC132.5 /REP_DB=WormBase Gene ID /WP=CE15044 /TR=O17517 /GB=AAB63932.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 11      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 13.3
(-1.3)
A 		1
(-3)
A 		3.2
(-2.7)
A 		43.2
(3)
A 		42
B 4
(-2.8)
A 		19
(0.4)
A 		2.8
(-3)
A 		31.7
(3)
A 		29
C 1.2
(-2.9)
A 		5.3
(-2.4)
A 		0.7
(-3)
A 		44.9
(3)
A 		44
avr 6.2
(-2.4) 		8.4
(-2) 		2.2
(-3) 		39.9
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 5.6
(-1.7)
A 		5.1
(-1.9)
A 		5.3
(-1.8)
A 		23.1
(3)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		22
B 5.3
(-1.1)
A 		12.7
(3)
A 		1.9
(-3)
A 		4.1
(-1.8)
A 		4.4
(-1.6)
A 		2.3
(-2.8)
A 		11
C 9.5
(-1.3)
A 		1.1
(-2.9)
A 		4.6
(-2.3)
A 		32.4
(3)
A 		2.4
(-2.7)
A 		0.8
(-3)
A 		32
avr 6.8
(-1.2) 		6.3
(-1.4) 		3.9
(-2.2) 		19.9
(3) 		2.6
(-2.6) 		1.4
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.9
(1.6)
A 		0.2
(-3)
A 		0.8
(-2.4)
A 		6.3
(3)
A 		6
B 1.3
(-2.4)
A 		4.7
(1)
A 		0.7
(-3)
A 		6.7
(3)
A 		6
C 0.4
(-2.8)
A 		1.5
(-1.9)
A 		0.2
(-3)
A 		7.6
(3)
A 		7
avr 2.2
(-1.5) 		2.1
(-1.6) 		0.6
(-3) 		6.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1
(-2.3)
A 		1.8
(-1.4)
A 		1.2
(-2)
A 		5.9
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		6
B 1.8
(-0.9)
A 		4.2
(3)
A 		0.5
(-3)
A 		1.1
(-2)
A 		1.8
(-0.9)
A 		0.9
(-2.4)
A 		4
C 3.5
(0.1)
A 		0.3
(-3)
A 		1.2
(-2.1)
A 		6.5
(3)
A 		0.8
(-2.5)
A 		0.3
(-3)
A 		6
avr 2.1
(-0.6) 		2.1
(-0.6) 		1
(-2.3) 		4.5
(3) 		1
(-2.3) 		0.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180108_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15518
Sequence Type Exemplar sequence
Representative Public ID ZC132.5 NCBI
Target Description ZC132.5 /REP_DB=WormBase Gene ID /WP=CE15044 /TR=O17517 /GB=AAB63932.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071786(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071786 NCBI Caenorhabditis elegans ZC132.5 (ZC132.5) mRNA, complete cds. 11/11 None
SNAP00000042301 ENSEMBL cdna:SNAP chromosome:CEL140:V:4301107:4310201:-1 10/11 None
GENEFINDER00000042308 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4301107:4308325:-1 11/11 None
ZC132.5 ENSEMBL cdna:known chromosome:CEL140:V:4304442:4308511:-1 gene:ZC132.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl ZC132.5
Entrez Gene 191081 Entrez gene
SwissProt O17517 EMBL-EBI
WormBase CE15044 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB63932 Hypothetical protein ZC132.5 [Caenorhabditis elegans] ref|NP_504187.1| ZC132.5 [Caenorhabditis elegans] 0.0
blast AAB63927 Hypothetical protein ZC132.4 [Caenorhabditis elegans] ref|NP_504186.1| ZC132.4 [Caenorhabditis elegans] 0.0
blast AAB63928 Hypothetical protein ZC132.6 [Caenorhabditis elegans] ref|NP_504188.2| ZC132.6 [Caenorhabditis elegans] 1.0E-146
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 1.0E-109
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 7.0E-4
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.1E-21
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 2.9E-6
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.1E-21
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 2.9E-6
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.1E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000042301 1 2438-2460
GENEFINDER00000042308 1 1740-1762
Sequence
Target Sequence 
>C. ELEGANS:180108_AT
ttgttggccaggtcgtactcatatgcgatccaaaccttccccgtaacaactggaaaatgg
gaaaaatcacggaaacaaaaccgtccacagatggaattctgagagaagcccatttattaa
cagcaacagggaggacaatcagaagacccataaatttgattactccattagagatcgaag
agattcaacatgaaacagacgctcaagacgcggaaaatgtcatggaggataacatggaaa
atattccagaaaagatccaagaagtagtcgcaaatgggcaaagcgagatcaacactgaaa
ttgatcagccaaatcagaacagaaggtacaatcttcgaaagaagaaaaccatcaactacg
aggagaaagatgatgacaataatcaggcacaaacagtctcaagatctcaaacatgggata
ttgggagaacaatgccaaaattattgttcctctcgctttttgcattgttgataagtcctt
cgatggcaacagctccaatagagtgtacacaactggcattcgaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTTGGCCAGGTCGTACTCATATG 187 677 3257 Antisense
TACTCATATGCGATCCAAACCTTCC 291 643 3272 Antisense
GAGAAGCCCATTTATTAACAGCAAC 501 391 3359 Antisense
GACCCATAAATTTGATTACTCCATT 662 381 3401 Antisense
GAAACAGACGCTCAAGACGCGGAAA 497 355 3448 Antisense
TGGGCAAAGCGAGATCAACACTGAA 193 553 3531 Antisense
CAGGCACAAACAGTCTCAAGATCTC 377 209 3640 Antisense
GCCAAAATTATTGTTCCTCTCGCTT 636 277 3690 Antisense
TTCCTCTCGCTTTTTGCATTGTTGA 588 699 3703 Antisense
TAAGTCCTTCGATGGCAACAGCTCC 460 637 3728 Antisense
GTGTACACAACTGGCATTCGAATCA 213 487 3759 Antisense
Sequence Source Affymetrix Proprietary Database