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[180107_at] 7TM chemoreceptor, srz family

Description C04C3.1 /REP_DB=WormBase Gene ID /WP=CE16807 /TR=O44454 /GB=AAB92022.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 01      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 2.6
(-3)
A 		12.9
(-1.2)
A 		7.8
(-2.1)
A 		36.1
(3)
A 		34
B 15.3
(3)
A 		5.7
(-2.3)
A 		4.8
(-2.8)
A 		4.5
(-3)
A 		11
C 4.7
(-3)
A 		4.8
(-3)
A 		18.6
(-1.2)
A 		51
(3)
A 		46
avr 7.5
(-3) 		7.8
(-2.9) 		10.4
(-2.2) 		30.5
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 3.3
(-2.8)
A 		4.9
(-1.5)
A 		10.6
(3)
A 		3
(-3)
A 		8.3
(1.2)
A 		4.3
(-2)
A 		8
B 3.8
(-3)
A 		4.8
(-2.8)
A 		4.9
(-2.7)
A 		8.6
(-1.8)
A 		24.2
(2.1)
A 		28
(3)
A 		24
C 6
(-0.1)
A 		7.8
(1)
A 		4.8
(-0.9)
A 		10.8
(3)
A 		1.6
(-3)
A 		4.4
(-1.2)
A 		9
avr 4.4
(-3) 		5.8
(-1.9) 		6.8
(-1.2) 		7.5
(-0.6) 		11.4
(2.4) 		12.2
(3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1
(-3)
A 		2.8
(-0.5)
A 		2
(-1.6)
A 		5.3
(3)
A 		4
B 4.9
(3)
A 		1.4
(-2.4)
A 		1.1
(-2.8)
A 		1
(-3)
A 		4
C 1.6
(-2.8)
A 		1.4
(-3)
A 		6.5
(1.3)
A 		8.6
(3)
A 		7
avr 2.5
(-1.8) 		1.9
(-3) 		3.2
(-0.5) 		5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.7
(0.5)
A 		2.3
(2.4)
A 		0.8
(-2.4)
A 		2.5
(3)
A 		1
(-1.7)
A 		2
B 1.3
(-2.9)
A 		1.6
(-2.7)
A 		1.2
(-3)
A 		2.3
(-2.3)
A 		9.8
(2.6)
A 		10.4
(3)
A 		9
C 2.2
(2.4)
A 		2.4
(3)
A 		1.2
(-0.8)
A 		2.2
(2.4)
A 		0.5
(-3)
A 		1.5
(0.2)
A 		2
avr 1.4
(-3) 		1.9
(-2) 		1.6
(-2.6) 		1.8
(-2.2) 		4.3
(3) 		4.3
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180107_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10520
Sequence Type Exemplar sequence
Representative Public ID C04C3.1 NCBI
Target Description C04C3.1 /REP_DB=WormBase Gene ID /WP=CE16807 /TR=O44454 /GB=AAB92022.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067942
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C04C3.1 ENSEMBL cdna:known chromosome:CEL140:IV:3428931:3430263:1 gene:C04C3.1 None
NM_067942 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-60) (srz-60) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3428936-3431083(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srz family
Gene Symbol srz-60
Ensembl C04C3.1
Entrez Gene 182194 Entrez gene
SwissProt O44454 EMBL-EBI
WormBase CE37183 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92022 Serpentine receptor, class z protein 60 [Caenorhabditis elegans] ref|NP_500343.2| Serpentine Receptor, class Z family member (srz-60) [Caenorhabditis elegans] 1.0E-161
blast CAB04367 Hypothetical protein F40D4.9a [Caenorhabditis elegans] ref|NP_001023905.1| Serpentine Receptor, class Z family member (srz-66) [Caenorhabditis elegans] 1.0E-49
blast CAH60792 Hypothetical protein Y7A9C.7 [Caenorhabditis elegans] ref|NP_001023586.1| Serpentine Receptor, class Z family member (srz-72) [Caenorhabditis elegans] 8.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.6E-89
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500343.2 8 20-42,66-88,93-110,114-133,150-169,179-201,222-244,254-276
C04C3.1 8 20-42,66-88,93-110,114-133,150-169,179-201,222-244,254-276
Sequence
Target Sequence 
>C. ELEGANS:180107_AT
cattttcaaactgctctatattccagcaattgcatttgctctgcttgtgagcacctttcc
atctctgtatcttacaactagtgtaagatgtgtggatatttttacaactcccttaataat
tcaaatttcctatttgctttgcaacaaacggaatgttaacacattgctcacttcgtttaa
tttgaagacatttttaaaagttttattcaatcaaaaaacaaattctgcagttcgccctct
tcatcaaatacatatcaccttttattatttttatctacaaagcgagagatttccgccatg
caaaaaagaaattacagacatgcccagtcgaaaaagaagtcgtgtaaagttgataatatt
tctcgaggtcgtcgtaatggttattgattttttcttttttcgaccaacagtgttttttca
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTTCAAACTGCTCTATATTCCA 670 215 612 Antisense
TTCCAGCAATTGCATTTGCTCTGCT 223 701 632 Antisense
TTGCTCTGCTTGTGAGCACCTTTCC 475 701 647 Antisense
CCTTTCCATCTCTGTATCTTACAAC 204 269 665 Antisense
TGGATATTTTTACAACTCCCTTAAT 141 549 704 Antisense
AACACATTGCTCACTTCGTTTAATT 521 135 769 Antisense
AAAGCGAGAGATTTCCGCCATGCAA 152 125 890 Antisense
GAAATTACAGACATGCCCAGTCGAA 335 363 919 Antisense
GTTGATAATATTTCTCGAGGTCGTC 76 439 960 Antisense
GAGGTCGTCGTAATGGTTATTGATT 101 403 976 Antisense
TTTCGACCAACAGTGTTTTTTCAGA 491 669 1009 Antisense
Sequence Source Affymetrix Proprietary Database