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[180105_at]

Description F32D1.6 /REP_DB=WormBase Gene ID /WP=CE09870 /TR=O16292 /GB=AAB65349.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 9
(1.5)
A 		8.5
(1.1)
A 		3.4
(-3)
A 		10.8
(3)
A 		7
B 7.2
(-3)
A 		13.4
(-2.2)
A 		7.1
(-3)
A 		54.7
(3)
A 		48
C 23.5
(-0.2)
A 		16.6
(-2.6)
A 		15.3
(-3)
A 		33
(3)
A 		18
avr 13.2
(-1.9) 		12.8
(-2) 		8.6
(-3) 		32.8
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 516
1 2 3 4 5 6 range
A 14.7
(-2.9)
A 		10.7
(-2.9)
A 		5.8
(-3)
A 		27.3
(-2.7)
A 		199.6
(-0.4)
P 		456.1
(3)
P 		450
B 9.6
(-2.9)
A 		3.7
(-3)
A 		7.7
(-2.9)
A 		55.7
(-2.3)
A 		237
(0)
P 		466.3
(3)
P 		463
C 9.6
(-3)
A 		8
(-3)
A 		6.1
(-3)
A 		65.4
(-2.3)
A 		252.8
(-0.1)
P 		519.8
(3)
P 		514
avr 11.3
(-2.9) 		7.5
(-3) 		6.5
(-3) 		49.5
(-2.5) 		229.8
(-0.2) 		480.7
(3) 		474
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.3
(3)
A 		1.8
(-0.8)
A 		0.9
(-3)
A 		1.6
(-1.3)
A 		2
B 2.3
(-2.6)
A 		3.3
(-2)
A 		1.6
(-3)
A 		11.7
(3)
A 		10
C 7.8
(3)
A 		4.8
(-3)
A 		5.3
(-2)
A 		5.6
(-1.4)
A 		3
avr 4.5
(0.1) 		3.3
(-1.9) 		2.6
(-3) 		6.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 2.7
(-2.9)
A 		3.8
(-2.9)
A 		1.3
(-3)
A 		6.9
(-2.7)
A 		60.2
(0.2)
P 		111
(3)
P 		110
B 3.3
(-2.9)
A 		1.2
(-3)
A 		1.9
(-3)
A 		14.8
(-2.5)
A 		96.3
(0.3)
P 		173.9
(3)
P 		173
C 3.6
(-2.9)
A 		2.4
(-3)
A 		1.6
(-3)
A 		13.2
(-2.6)
A 		81.8
(-0.2)
P 		174
(3)
P 		172
avr 3.2
(-2.9) 		2.5
(-3) 		1.6
(-3) 		11.6
(-2.6) 		79.4
(0.1) 		153
(3) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180105_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14982
Sequence Type Exemplar sequence
Representative Public ID F32D1.6 NCBI
Target Description F32D1.6 /REP_DB=WormBase Gene ID /WP=CE09870 /TR=O16292 /GB=AAB65349.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071803(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071803 NCBI Caenorhabditis elegans F32D1.6 (F32D1.6) mRNA, complete cds. 11/11 None
SNAP00000007319 ENSEMBL cdna:SNAP chromosome:CEL140:V:4373740:4374660:-1 11/11 None
GENEFINDER00000007339 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4373740:4374572:-1 11/11 None
F32D1.6 ENSEMBL cdna:known chromosome:CEL140:V:4373740:4374572:-1 gene:F32D1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4373739-4374572(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32D1.6
Entrez Gene 185201 Entrez gene
SwissProt O16292 EMBL-EBI
WormBase CE09870 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65349 Hypothetical protein F32D1.6 [Caenorhabditis elegans] ref|NP_504204.1| F32D1.6 [Caenorhabditis elegans] 3.0E-65
Sequence
Target Sequence 
>C. ELEGANS:180105_AT
caacaatcccgggaactccgaatcttttgggatacactgcgtacagtccacagtcgatct
tcaatgattcccggccggcttcttcggtaaataacactccatccacatcgttcaatagct
caattcattccagaaatcggtcgattgcaatgctccattcaatatcgcacatcctttcca
atgacgactcgctgggctcgacaacggagagcagtacaccgagcacgccggaaattcatc
cgagcaatgcacctgcaaagaagacgattccacttgtgttgatatcggataccgatgagg
aatgtgacaagaaaagcagaaaacggaggattcgctcgaaatcttcgaagaagtctcgcg
ggatccgtaagagcaggaaacacgaagcatcagactaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAATCCCGGGAACTCCGAATCT 221 189 47 Antisense
GATACACTGCGTACAGTCCACAGTC 649 423 77 Antisense
CAGTCGATCTTCAATGATTCCCGGC 527 207 97 Antisense
TTCGGTAAATAACACTCCATCCACA 531 695 129 Antisense
TCCATCCACATCGTTCAATAGCTCA 279 591 144 Antisense
AAATCGGTCGATTGCAATGCTCCAT 678 117 180 Antisense
CAATATCGCACATCCTTTCCAATGA 246 181 206 Antisense
CTTTCCAATGACGACTCGCTGGGCT 500 223 220 Antisense
AGTACACCGAGCACGCCGGAAATTC 558 59 259 Antisense
GAAGTCTCGCGGGATCCGTAAGAGC 511 333 396 Antisense
GAAACACGAAGCATCAGACTACCGA 586 355 423 Antisense
Sequence Source Affymetrix Proprietary Database