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[180104_at]

Description K10C9.1 /REP_DB=WormBase Gene ID /WP=CE18043 /TR=O61891 /GB=AAC17669.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 78      4grp_high_8_8 > 04      6grp_total > 69      4grp_total > 04      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 952
1 2 3 4 range
A 495.4
(-0.9)
P 		164.9
(-3)
M 		206.4
(-2.7)
P 		1110.9
(3)
P 		946
B 353.7
(-1.6)
P 		255.3
(-2.3)
P 		162.3
(-3)
P 		974.7
(3)
P 		812
C 487.2
(-1.3)
P 		245.5
(-3)
P 		276.6
(-2.8)
P 		1114.7
(3)
P 		869
avr 445.4
(-1.4) 		221.9
(-3) 		215.1
(-3) 		1066.8
(3) 		852

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 537
1 2 3 4 5 6 range
A 205
(-3)
A 		221.2
(-2.5)
P 		257.2
(-1.3)
P 		265.2
(-1.1)
P 		312.4
(0.4)
P 		394.5
(3)
P 		190
B 386.1
(-0.4)
P 		321.5
(-1.4)
P 		316.8
(-1.5)
P 		220.7
(-3)
P 		397.5
(-0.2)
P 		600.1
(3)
P 		379
C 380.3
(-0.3)
P 		271.6
(-1.6)
P 		142.9
(-3)
A 		248.2
(-1.8)
P 		323.4
(-1)
P 		680.2
(3)
P 		537
avr 323.8
(-1.4) 		271.4
(-2.4) 		239
(-3) 		244.7
(-2.9) 		344.4
(-1) 		558.3
(3) 		319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 180.4
(3)
P 		35.8
(-3)
M 		54
(-2.2)
P 		162.6
(2.3)
P 		145
B 112.8
(-0.3)
P 		63.1
(-2.1)
P 		37.6
(-3)
P 		207.7
(3)
P 		170
C 161.3
(1.6)
P 		70.6
(-3)
P 		96.4
(-1.7)
P 		188
(3)
P 		117
avr 151.5
(1.4) 		56.5
(-3) 		62.7
(-2.7) 		186.1
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 37.8
(-3)
A 		78.7
(1.2)
P 		56
(-1.1)
P 		67.3
(0)
P 		94.3
(2.8)
P 		96.1
(3)
P 		58
B 134.3
(-0.2)
P 		107
(-1.2)
P 		76.9
(-2.3)
P 		58.5
(-3)
P 		161.5
(0.7)
P 		223.8
(3)
P 		165
C 141
(0.3)
P 		82.9
(-1.5)
P 		36.4
(-3)
A 		49.9
(-2.6)
P 		104.7
(-0.9)
P 		227.7
(3)
P 		191
avr 104.4
(-0.7) 		89.5
(-1.4) 		56.4
(-3) 		58.6
(-2.9) 		120.2
(0) 		182.5
(3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180104_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14989
Sequence Type Exemplar sequence
Representative Public ID K10C9.1 NCBI
Target Description K10C9.1 /REP_DB=WormBase Gene ID /WP=CE18043 /TR=O61891 /GB=AAC17669.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070972(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070972 NCBI Caenorhabditis elegans K10C9.1 (K10C9.1) mRNA, complete cds. 11/11 None
K10C9.1 ENSEMBL cdna:known chromosome:CEL140:V:1075101:1075619:1 gene:K10C9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1075100-1075619(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10C9.1
Entrez Gene 187259 Entrez gene
SwissProt O61891 EMBL-EBI
WormBase CE18043 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503373 K10C9.1 [Caenorhabditis elegans] gb|AAC17669.1| Hypothetical protein K10C9.1 [Caenorhabditis elegans] 7.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503373.1 2 3-25,30-52
K10C9.1 2 3-25,30-52
Sequence
Target Sequence 
>C. ELEGANS:180104_AT
cgtcgttcttcttctcattaacgtcatcggagctgtttcatcgttttatgtgttgagaag
tagtggcagtcaaggagccgccatagtacaaattttaaatgatttttttgaaattttcgt
ggtgctaaaattcttaaatatcaccaattttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCGTTCTTCTTCTCATTAACGTC 476 245 27 Antisense
TCTTCTTCTCATTAACGTCATCGGA 392 617 33 Antisense
TAACGTCATCGGAGCTGTTTCATCG 188 637 45 Antisense
ATCGGAGCTGTTTCATCGTTTTATG 443 35 52 Antisense
GCTGTTTCATCGTTTTATGTGTTGA 682 295 58 Antisense
TATGTGTTGAGAAGTAGTGGCAGTC 660 653 73 Antisense
GTAGTGGCAGTCAAGGAGCCGCCAT 118 455 86 Antisense
GCAGTCAAGGAGCCGCCATAGTACA 146 311 92 Antisense
GGAGCCGCCATAGTACAAATTTTAA 238 521 100 Antisense
TTTCGTGGTGCTAAAATTCTTAAAT 410 669 141 Antisense
AATTCTTAAATATCACCAATTTTCA 624 173 155 Antisense
Sequence Source Affymetrix Proprietary Database