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[180101_s_at]

Description W05F2.3 /REP_DB=WormBase Gene ID /WP=CE14616 /TR=Q9TYT8 /GB=AAC78214.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 48.4
(-3)
A 		161
(0.5)
M 		145.2
(-0)
A 		242.4
(3)
P 		194
B 52.7
(-3)
A 		159
(-0.4)
P 		73.7
(-2.5)
M 		295.3
(3)
P 		243
C 62.8
(-3)
A 		182.2
(1.9)
A 		127.9
(-0.3)
P 		208.3
(3)
P 		146
avr 54.6
(-3) 		167.4
(0.5) 		115.6
(-1.1) 		248.7
(3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3632
1 2 3 4 5 6 range
A 75.9
(-2.9)
A 		17.5
(-3)
A 		105.4
(-2.9)
A 		255.5
(-2.6)
P 		1776.2
(-0.1)
P 		3647.9
(3)
P 		3630
B 59.8
(-2.9)
A 		15.5
(-3)
A 		90.1
(-2.9)
A 		288.2
(-2.5)
P 		1855.6
(0.5)
P 		3154.5
(3)
P 		3139
C 68.4
(-3)
A 		82.1
(-3)
A 		141.8
(-2.9)
A 		216.3
(-2.7)
P 		1854.5
(0.5)
P 		3115.8
(3)
P 		3047
avr 68
(-2.9) 		38.4
(-3) 		112.4
(-2.9) 		253.3
(-2.6) 		1828.8
(0.3) 		3306.1
(3) 		3268
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 17.6
(-3)
A 		35
(2.1)
M 		38
(3)
A 		35.5
(2.3)
P 		20
B 16.8
(-3)
A 		39.3
(-0.1)
P 		17.1
(-3)
M 		62.9
(3)
P 		46
C 20.8
(-3)
A 		52.4
(3)
A 		44.6
(1.5)
P 		35.1
(-0.3)
P 		32
avr 18.4
(-3) 		42.2
(2.5) 		33.2
(0.4) 		44.5
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1171
1 2 3 4 5 6 range
A 14
(-2.9)
A 		6.2
(-3)
A 		22.9
(-2.9)
A 		64.8
(-2.6)
P 		536
(0.6)
P 		888.2
(3)
P 		882
B 20.8
(-2.9)
A 		5.2
(-3)
A 		21.9
(-2.9)
A 		76.3
(-2.6)
P 		753.9
(0.8)
P 		1176.3
(3)
P 		1171
C 25.3
(-3)
A 		25.1
(-3)
A 		36.1
(-2.9)
A 		43.5
(-2.9)
P 		600.1
(0.4)
P 		1043
(3)
P 		1018
avr 20
(-3) 		12.2
(-3) 		27
(-2.9) 		61.5
(-2.7) 		630
(0.6) 		1035.8
(3) 		1024
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180101_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.49
Sequence Type Exemplar sequence
Representative Public ID W05F2.3 NCBI
Target Description W05F2.3 /REP_DB=WormBase Gene ID /WP=CE14616 /TR=Q9TYT8 /GB=AAC78214.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058749(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058749 NCBI Caenorhabditis elegans W05F2.3 (W05F2.3) mRNA, complete cds. 11/11 None
SNAP00000029374 ENSEMBL cdna:SNAP chromosome:CEL140:I:3367769:3370798:-1 11/11 None
GENEFINDER00000029380 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3367769:3368551:-1 11/11 None
W05F2.3 ENSEMBL cdna:known chromosome:CEL140:I:3367635:3368553:-1 gene:W05F2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3367768-3368551(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05F2.3
Entrez Gene 171908 Entrez gene
SwissProt Q9TYT8 EMBL-EBI
WormBase CE14616 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491150 W05F2.3 [Caenorhabditis elegans] gb|AAC78214.1| Hypothetical protein W05F2.3 [Caenorhabditis elegans] 1.0E-118
blast CAE68979 Hypothetical protein CBG14962 [Caenorhabditis briggsae] 3.0E-66
blast CAE68979 Hypothetical protein CBG14962 [Caenorhabditis briggsae] 4.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491150.1 1 155-174
W05F2.3 1 155-174
SNAP00000029374 1 167-186
GENEFINDER00000029380 1 155-174
Sequence
Target Sequence 
>C. ELEGANS:180101_S_AT
tcgactgcaaaatccgtgcaccacgagcctcatcggttggacgacaaggattcggttgag
caggtgatcagtgaggcgctgaaggatatcgatgcatcgaagaagatgattcgaatgact
gtgacgatgaacgacactgccgacgattccgcttcgaacttcttccgcgacttcgaggac
accttcagcgggatgttcaacgccattcagaacacccacgtaccattcttcagcagcagt
gaaagttcgctgtctccagtcgccccaaagaccaaccaaaccaccgaagatctcttgaca
cgtacacgaaacgagctccaggcggatatcgacagtctccgcggacacatcgtctatctc
caggccgacgttcgtgattggatcctttccaacgagaatagtcagttcaagtctgtgctt
ctcggtgcaatgtccgccatcgtcgtgctcatcgcatacactgtcatttgcaagtgctgt
cgcagacgctctcgcctcaaccatctcgccgctttcgtcaatgatggatgctctgcccag
gatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACTGCAAAATCCGTGCACCACG 551 601 64 Antisense
GAGCCTCATCGGTTGGACGACAAGG 77 383 88 Antisense
GTTCAACGCCATTCAGAACACCCAC 648 445 258 Antisense
CACGTACCATTCTTCAGCAGCAGTG 556 197 280 Antisense
CAGTGAAAGTTCGCTGTCTCCAGTC 58 207 300 Antisense
GAGCTCCAGGCGGATATCGACAGTC 463 387 376 Antisense
GGCCGACGTTCGTGATTGGATCCTT 541 507 426 Antisense
GTCAGTTCAAGTCTGTGCTTCTCGG 57 467 464 Antisense
TTTGCAAGTGCTGTCGCAGACGCTC 550 667 530 Antisense
CTCGCCGCTTTCGTCAATGATGGAT 505 233 568 Antisense
AATGATGGATGCTCTGCCCAGGATT 398 163 583 Antisense
Sequence Source Affymetrix Proprietary Database