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[180100_at]

Description R04E5.9 /REP_DB=WormBase Gene ID /WP=CE04801 /TR=Q9GYL3 /GB=AAG00011.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 30.2
(-3)
A 		63.2
(0.4)
A 		88
(3)
M 		45
(-1.5)
A 		58
B 10.8
(-3)
A 		56.1
(3)
A 		42.2
(1.2)
A 		51.4
(2.4)
A 		45
C 48
(-2.4)
A 		94.7
(3)
A 		51.6
(-2)
P 		42.8
(-3)
A 		52
avr 29.7
(-3) 		71.3
(3) 		60.6
(1.5) 		46.4
(-0.6) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 13.9
(-3)
A 		24.7
(-1.2)
A 		29.1
(-0.5)
A 		26.3
(-0.9)
A 		49.9
(3)
A 		48.4
(2.8)
A 		36
B 66.9
(3)
P 		41.1
(0.2)
A 		11.1
(-3)
A 		53.8
(1.6)
A 		37.2
(-0.2)
A 		36.1
(-0.3)
M 		56
C 46.6
(1.3)
P 		21.7
(-3)
A 		46.3
(1.2)
P 		56.5
(3)
A 		21.7
(-3)
A 		41.8
(0.5)
A 		35
avr 42.5
(1.9) 		29.2
(-2.9) 		28.8
(-3) 		45.5
(3) 		36.3
(-0.3) 		42.1
(1.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 11
(-1.4)
A 		13.7
(-0.4)
A 		23
(3)
M 		6.6
(-3)
A 		16
B 3.5
(-3)
A 		13.8
(3)
A 		9.8
(0.7)
A 		10.9
(1.3)
A 		10
C 15.9
(-0.4)
A 		27.2
(3)
A 		18
(0.2)
P 		7.2
(-3)
A 		20
avr 10.1
(-1.9) 		18.2
(3) 		16.9
(2.2) 		8.2
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.6
(-3)
A 		8.8
(-0)
A 		6.3
(-1.2)
A 		6.7
(-1)
A 		15.1
(3)
A 		11.8
(1.4)
A 		13
B 23.3
(3)
P 		13.7
(0.2)
A 		2.7
(-3)
A 		14.3
(0.4)
A 		15.1
(0.6)
A 		13.5
(0.1)
M 		21
C 17.3
(3)
P 		6.6
(-3)
A 		11.8
(-0.1)
P 		11.4
(-0.3)
A 		7
(-2.8)
A 		14
(1.1)
A 		11
avr 14.4
(3) 		9.7
(-0.8) 		6.9
(-3) 		10.8
(0.1) 		12.4
(1.4) 		13.1
(2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180100_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16399
Sequence Type Exemplar sequence
Representative Public ID R04E5.9 NCBI
Target Description R04E5.9 /REP_DB=WormBase Gene ID /WP=CE04801 /TR=Q9GYL3 /GB=AAG00011.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077091 NCBI Caenorhabditis elegans R04E5.9 (R04E5.9) mRNA, complete cds. 11/11 None
GENEFINDER00000036372 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8806581:8811316:-1 11/11 None
R04E5.9 ENSEMBL cdna:known chromosome:CEL140:X:8806063:8810972:-1 gene:R04E5.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036366 6/11 Cross Hyb Matching Probes None
SNAP00000036367 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8806788-8810929(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R04E5.9
Entrez Gene 181128 Entrez gene
SwissProt Q9GYL3 EMBL-EBI
WormBase CE04801 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00011 Hypothetical protein R04E5.9 [Caenorhabditis elegans] ref|NP_509492.1| R04E5.9 [Caenorhabditis elegans] 5.0E-37
blast AAG00011 Hypothetical protein R04E5.9 [Caenorhabditis elegans] ref|NP_509492.1| R04E5.9 [Caenorhabditis elegans] 2.0E-33
Sequence
Target Sequence 
>C. ELEGANS:180100_AT
agatgcgcatgtgctgggcgacgatgaaccagatggagatctgccagaacttccaaaaat
tgctgctcggcagagaaaatcaaagatcgtgagaaaacaaggcaggaaaacgaaaaggaa
gactcgaaagtcaaagacaggagcaacaaagcgaaggaaaggaactaaacgacgacggaa
aaccacatcaaaatcgttagacaaaggggaaagtattggaagagtcaagcgatacgggcg
agaaaaggaacaaaagcttcatattcgccaaaacgatgatgtcattgtggtcgatgaggt
cccaagtgcagataaagttcccactccacctcctgcgcctgcaaagcctacgccgtcgaa
cattcttgatcaaatccttttcgctcaggaaaaagttcttgctccaactgataccgcaag
aaagtcgttcacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGCGCATGTGCTGGGCGACGAT 305 67 57 Antisense
GATGGAGATCTGCCAGAACTTCCAA 481 407 88 Antisense
ACTTCCAAAAATTGCTGCTCGGCAG 603 103 105 Antisense
GGAAGAGTCAAGCGATACGGGCGAG 358 527 274 Antisense
CAAAAGCTTCATATTCGCCAAAACG 650 189 307 Antisense
GGTCGATGAGGTCCCAAGTGCAGAT 209 503 345 Antisense
AGTGCAGATAAAGTTCCCACTCCAC 138 61 361 Antisense
CTACGCCGTCGAACATTCTTGATCA 473 225 404 Antisense
TCTTGATCAAATCCTTTTCGCTCAG 673 617 420 Antisense
AAAGTTCTTGCTCCAACTGATACCG 266 123 448 Antisense
GATACCGCAAGAAAGTCGTTCACCA 89 425 466 Antisense
Sequence Source Affymetrix Proprietary Database