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[180098_s_at]

Description F49E2.5F /REP_DB=WormBase Gene ID /WP=CE16092 /TR=O45543 /GB=CAA86426.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 65      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_total > 56      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 135.2
(-0.7)
P 		134.6
(-0.8)
P 		161.5
(3)
P 		118.6
(-3)
P 		43
B 144.1
(0.4)
P 		139.5
(0.1)
P 		92.4
(-3)
P 		184.6
(3)
P 		92
C 132.8
(-0.7)
P 		88.6
(-2.9)
P 		87.5
(-3)
P 		206.9
(3)
P 		119
avr 137.4
(-0.5) 		120.9
(-2.2) 		113.8
(-3) 		170
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 109.1
(1.8)
P 		73.8
(-0)
P 		112.7
(2)
P 		17.3
(-3)
A 		37.5
(-1.9)
A 		131
(3)
P 		114
B 105.9
(-0.8)
P 		98.8
(-1.1)
P 		114.8
(-0.4)
P 		71.6
(-2.3)
P 		54.6
(-3)
A 		192.4
(3)
P 		138
C 76.9
(0.6)
P 		105.4
(2.3)
P 		71.5
(0.3)
A 		14.9
(-3)
A 		63.8
(-0.1)
P 		117.7
(3)
P 		103
avr 97.3
(0.3) 		92.7
(0.1) 		99.7
(0.5) 		34.6
(-3) 		52
(-2.1) 		147
(3) 		112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 49.2
(3)
P 		29.2
(-0.8)
P 		42.2
(1.7)
P 		17.4
(-3)
P 		32
B 46
(3)
P 		34.4
(0.2)
P 		21.4
(-3)
P 		39.3
(1.4)
P 		25
C 44
(3)
P 		25.5
(-3)
P 		30.5
(-1.4)
P 		34.9
(0)
P 		19
avr 46.4
(3) 		29.7
(-3) 		31.4
(-2.4) 		30.5
(-2.7) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 20.1
(0.4)
P 		26.2
(1.8)
P 		24.6
(1.4)
P 		4.4
(-3)
A 		11.3
(-1.5)
A 		31.9
(3)
P 		28
B 36.9
(-1)
P 		32.9
(-1.4)
P 		27.9
(-2)
P 		19
(-3)
P 		22.2
(-2.6)
A 		71.8
(3)
P 		53
C 28.5
(1.2)
P 		32.2
(1.8)
P 		18.2
(-0.5)
A 		3
(-3)
A 		20.7
(-0.1)
P 		39.4
(3)
P 		36
avr 28.5
(0) 		30.4
(0.3) 		23.6
(-0.7) 		8.8
(-3) 		18.1
(-1.6) 		47.7
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180098_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16400
Sequence Type Exemplar sequence
Representative Public ID F49E2.5F NCBI
Target Description F49E2.5F /REP_DB=WormBase Gene ID /WP=CE16092 /TR=O45543 /GB=CAA86426.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029524(11), NM_077208(11), NM_171968(11), NM_077209(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029524 NCBI Caenorhabditis elegans F49E2.5j (F49E2.5) mRNA, complete cds. 11/11 None
NM_077208 NCBI Caenorhabditis elegans F49E2.5f (F49E2.5) mRNA, complete cds. 11/11 A 
NM_171968 NCBI Caenorhabditis elegans F49E2.5g (F49E2.5) mRNA, complete cds. 11/11 A 
NM_077209 NCBI Caenorhabditis elegans F49E2.5e (F49E2.5) mRNA, complete cds. 11/11 None
SNAP00000006377 ENSEMBL cdna:SNAP chromosome:CEL140:X:9552823:9559810:1 11/11 None
GENEFINDER00000006386 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9552823:9559810:1 11/11 None
F49E2.5e ENSEMBL cdna:known chromosome:CEL140:X:9552823:9558426:1 gene:F49E2.5 11/11 A 
F49E2.5f ENSEMBL cdna:known chromosome:CEL140:X:9552823:9555527:1 gene:F49E2.5 11/11 A 
F49E2.5g ENSEMBL cdna:known chromosome:CEL140:X:9552823:9555527:1 gene:F49E2.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181175 10 4 NM_001029522 180309_s_at (10)
NM_001029523 171758_x_at (9), 172298_x_at (10), 180309_s_at (10)
NM_001029524 171758_x_at (9), 172298_x_at (10), 174674_at (11), 180098_s_at (11), 180309_s_at (10)
NM_077204 171758_x_at (9), 172298_x_at (10), 180309_s_at (10)
NM_077205 180309_s_at (10)
NM_077206 180309_s_at (10)
NM_077207 180309_s_at (10)
NM_077208 171758_x_at (9), 172298_x_at (10), 180098_s_at (11)
NM_077209 171758_x_at (10), 172298_x_at (11), 180098_s_at (11)
NM_171968 171758_x_at (9), 172298_x_at (10), 180098_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9552822-9555527(+) 96.3 100.0
Public Domain and Genome References
Ensembl F49E2.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79255 Hypothetical protein F49E2.5j [Caenorhabditis elegans] ref|NP_001024695.1| F49E2.5j [Caenorhabditis elegans] 0.0
blast CAA86429 Hypothetical protein F49E2.5b [Caenorhabditis elegans] ref|NP_509607.2| F49E2.5b [Caenorhabditis elegans] 0.0
blast CAH04746 Hypothetical protein F49E2.5h [Caenorhabditis elegans] ref|NP_001024693.1| F49E2.5h [Caenorhabditis elegans] 0.0
blast CAA86428 Hypothetical protein F49E2.5a [Caenorhabditis elegans] ref|NP_509605.2| F49E2.5a [Caenorhabditis elegans] 0.0
blast CAA86424 Hypothetical protein F49E2.5c [Caenorhabditis elegans] ref|NP_509608.2| F49E2.5c [Caenorhabditis elegans] 0.0
blast CAA86425 Hypothetical protein F49E2.5e [Caenorhabditis elegans] ref|NP_509610.1| F49E2.5e [Caenorhabditis elegans] 1.0E-170
Protein Domains
Database ID Description E-Value
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 6.1E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 3.4E-10
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.7E-95
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 6.1E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 3.4E-10
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 7.4E-56
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 6.1E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.4E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 2.3E-7
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 4.9E-32
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 9.7E-9
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.4E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 2.3E-7
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 4.9E-32
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 9.7E-9
Sequence
Target Sequence 
>C. ELEGANS:180098_S_AT
gaaaaccagcgaaagtgagtccaaacgtccaacggccgatgacagcatggacttcttaga
ctttgtgaccgccaaaccagagaaaccagaacaggtggtcgaggaacagcctgtagttca
ggaagtccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACCAGCGAAAGTGAGTCCAAA 550 353 1686 Antisense
GAAAGTGAGTCCAAACGTCCAACGG 217 361 1696 Antisense
GTCCAACGGCCGATGACAGCATGGA 444 477 1712 Antisense
TGGACTTCTTAGACTTTGTGACCGC 49 549 1733 Antisense
ACTTCTTAGACTTTGTGACCGCCAA 400 101 1736 Antisense
TAGACTTTGTGACCGCCAAACCAGA 216 651 1742 Antisense
TGTGACCGCCAAACCAGAGAAACCA 568 555 1749 Antisense
GAGAAACCAGAACAGGTGGTCGAGG 239 391 1765 Antisense
AGGTGGTCGAGGAACAGCCTGTAGT 408 51 1778 Antisense
GGTCGAGGAACAGCCTGTAGTTCAG 327 503 1782 Antisense
ACAGCCTGTAGTTCAGGAAGTCCCA 345 109 1791 Antisense
Sequence Source Affymetrix Proprietary Database