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[180097_at]

Description T02C5.4 /REP_DB=WormBase Gene ID /WP=CE23939 /TR=Q22097 /GB=AAB36867.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 16      4grp_highest_8_8 > 58      4grp_high_8_8 > 32      6grp_highest_nonorm > 50      6grp_total > 06      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 771
1 2 3 4 range
A 1019.7
(3)
P 		373.4
(-2.4)
P 		298.9
(-3)
P 		399.5
(-2.2)
P 		721
B 922.2
(3)
P 		400.7
(-1.6)
P 		249.2
(-3)
P 		326.9
(-2.3)
P 		673
C 936
(3)
P 		330.5
(-2.5)
P 		314.4
(-2.6)
P 		271
(-3)
P 		665
avr 959.3
(3) 		368.2
(-2.3) 		287.5
(-3) 		332.5
(-2.6) 		672

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1010
1 2 3 4 5 6 range
A 815.4
(3)
P 		745.6
(2.3)
P 		206.6
(-3)
P 		307.2
(-2)
P 		265.5
(-2.4)
P 		293.2
(-2.1)
P 		609
B 742.8
(3)
P 		600.8
(1.5)
P 		289
(-1.7)
P 		273.7
(-1.9)
P 		167.9
(-3)
P 		208.4
(-2.6)
P 		575
C 1147.3
(3)
P 		481.3
(-1)
P 		433.7
(-1.2)
P 		240.2
(-2.4)
P 		300.4
(-2)
P 		137.3
(-3)
P 		1010
avr 901.8
(3) 		609.2
(0.5) 		309.8
(-2.2) 		273.7
(-2.5) 		244.6
(-2.7) 		213
(-3) 		689
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 326
1 2 3 4 range
A 371.3
(3)
P 		81.1
(-2.6)
P 		78.1
(-2.6)
P 		58.5
(-3)
P 		313
B 294.1
(3)
P 		99
(-2)
P 		57.7
(-3)
P 		69.7
(-2.7)
P 		236
C 309.9
(3)
P 		95
(-1.9)
P 		109.6
(-1.5)
P 		45.7
(-3)
P 		264
avr 325.1
(3) 		91.7
(-2.2) 		81.8
(-2.5) 		58
(-3) 		267

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 150.3
(-0.1)
P 		265.2
(3)
P 		45
(-3)
P 		77.9
(-2.1)
P 		80.1
(-2)
P 		71.4
(-2.3)
P 		220
B 258.5
(3)
P 		200
(1.2)
P 		70.2
(-2.9)
P 		72.5
(-2.9)
P 		68.2
(-3)
P 		77.7
(-2.7)
P 		190
C 425.3
(3)
P 		146.9
(-1.4)
P 		110.4
(-2)
P 		48.3
(-3)
P 		97.2
(-2.2)
P 		46
(-3)
P 		379
avr 278
(3) 		204
(0.9) 		75.2
(-2.7) 		66.2
(-3) 		81.8
(-2.5) 		65
(-3) 		213
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18193
Sequence Type Exemplar sequence
Representative Public ID T02C5.4 NCBI
Target Description T02C5.4 /REP_DB=WormBase Gene ID /WP=CE23939 /TR=Q22097 /GB=AAB36867.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029700(11), NM_171638(11), NM_171942(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029700 NCBI Caenorhabditis elegans UNCoordinated family member (unc-2) (unc-2) mRNA, complete cds. 11/11 None
NM_171638 NCBI Caenorhabditis elegans UNCoordinated family member (unc-2) (unc-2) mRNA, complete cds. 11/11 None
NM_171942 NCBI Caenorhabditis elegans UNCoordinated family member (unc-2) (unc-2) mRNA, complete cds. 11/11 None
SNAP00000029794 ENSEMBL cdna:SNAP chromosome:CEL140:X:2711622:2714346:-1 10/11 None
T02C5.5d.3 ENSEMBL cdna:known chromosome:CEL140:X:2710914:2736271:-1 gene:T02C5.5 11/11 A 
T02C5.5b ENSEMBL cdna:known chromosome:CEL140:X:2711622:2736215:-1 gene:T02C5.5 11/11 None
T02C5.5d.2 ENSEMBL cdna:known chromosome:CEL140:X:2711622:2717002:-1 gene:T02C5.5 11/11 None
T02C5.5c ENSEMBL cdna:known chromosome:CEL140:X:2711622:2725626:-1 gene:T02C5.5 11/11 None
T02C5.5d.1 ENSEMBL cdna:known chromosome:CEL140:X:2711622:2713408:-1 gene:T02C5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180570 4 3 NM_001029700 174819_at (11), 180097_at (11)
NM_171638 180097_at (11)
NM_171942 180097_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2711621-2715166(-) 96.5 100.0
Public Domain and Genome References
Ensembl T02C5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP82640 Uncoordinated protein 2, isoform b [Caenorhabditis elegans] ref|NP_741732.2| UNCoordinated family member (unc-2) [Caenorhabditis elegans] gb|AAP13107.1| high voltage activated calcium channel alpha-1 subunit [Caenorhabditis elegans] 0.0
blast AAM69092 Uncoordinated protein 2, isoform c [Caenorhabditis elegans] ref|NP_741733.1| UNCoordinated family member (unc-2) [Caenorhabditis elegans] 0.0
blast AAB36868 Uncoordinated protein 2, isoform a [Caenorhabditis elegans] ref|NP_741734.1| UNCoordinated family member (unc-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005821 EMBL-EBI Ion transport protein 1.3E-62
Pfam IPR005821 EMBL-EBI Ion transport protein 6.6E-57
Pfam IPR005821 EMBL-EBI Ion transport protein 1.6E-59
Pfam IPR005821 EMBL-EBI Ion transport protein 1.1E-62
Pfam IPR005821 EMBL-EBI Ion transport protein 1.3E-62
Pfam IPR005821 EMBL-EBI Ion transport protein 4.0E-39
Pfam IPR005821 EMBL-EBI Ion transport protein 1.6E-59
Pfam IPR005821 EMBL-EBI Ion transport protein 1.1E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741732.2 17 105-127,147-169,176-198,248-270,332-354,364-386,524-546,561-583,649-671,728-750,989-1011,1104-1126,1177-1199,1214-1236,1249-1271,1311-1333,1399-1421
NP_741733.1 16 22-44,51-73,122-144,206-228,238-260,390-412,427-449,515-537,609-631,870-892,985-1007,1058-1080,1095-1117,1130-1152,1192-1214,1280-1302
T02C5.5b 17 105-127,147-169,176-198,248-270,332-354,364-386,524-546,561-583,649-671,728-750,989-1011,1104-1126,1177-1199,1214-1236,1249-1271,1311-1333,1399-1421
T02C5.5c 16 22-44,51-73,122-144,206-228,238-260,390-412,427-449,515-537,609-631,870-892,985-1007,1058-1080,1095-1117,1130-1152,1192-1214,1280-1302
Sequence
Target Sequence 
>C. ELEGANS:180097_AT
cgaagatatcaagactccactccacaagatgtcagcgaggacgacgacccgatgcctacg
gcggtccgagcgcgccgattaccactgatttccacaatgcccacgcactacgagtcggcc
taccagccatcatcatataaccagcatctcaatgattcatatggtttaggaaccgggtac
caacgagattatcacactagtcattcacactcgcaccatcccacctcacaacaacaacaa
catcagcccatgtacagcacgtcaccactaatatcaccgagatcgagtcatagctactac
acgccgaggagctcgcaatactatgaaataccatcgccgagtccagatatttatccatcg
tatcgtggatcggcatcacctcgcaggtaccccaccagtaccgtcgtagtggctccagat
cgagaaggttcgagcgctcgcgtcattcaagctcagcctggctcgataccactatctgac
tcggaaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAAGATATCAAGACTCCACTCCAC 296 253 493 Antisense
CGATTACCACTGATTTCCACAATGC 136 249 568 Antisense
GCCATCATCATATAACCAGCATCTC 382 281 618 Antisense
TATCACACTAGTCATTCACACTCGC 693 657 682 Antisense
TGTACAGCACGTCACCACTAATATC 498 557 743 Antisense
GATCGAGTCATAGCTACTACACGCC 630 417 773 Antisense
GAAATACCATCGCCGAGTCCAGATA 385 363 817 Antisense
TCGTATCGTGGATCGGCATCACCTC 666 601 850 Antisense
CCACCAGTACCGTCGTAGTGGCTCC 425 271 884 Antisense
TTCAAGCTCAGCCTGGCTCGATACC 437 685 938 Antisense
GATACCACTATCTGACTCGGAAACA 59 425 957 Antisense
Sequence Source Affymetrix Proprietary Database