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[180094_at]

Description T05E8.2 /REP_DB=WormBase Gene ID /WP=CE13243 /TR=O01597 /GB=AAB52426.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 60.5
(0.2)
A 		12.2
(-3)
A 		79.7
(1.5)
A 		102.5
(3)
P 		90
B 59.9
(-1.2)
A 		47.7
(-2.6)
A 		44.5
(-3)
A 		95.5
(3)
A 		51
C 47.6
(-3)
A 		78
(-1.1)
A 		57.1
(-2.4)
A 		142.4
(3)
P 		95
avr 56
(-2.1) 		46
(-3) 		60.4
(-1.7) 		113.5
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 59.8
(0.7)
A 		47.2
(-1.3)
A 		62.1
(1)
P 		69.7
(2.2)
A 		74.9
(3)
A 		36.2
(-3)
A 		39
B 71.3
(2.2)
M 		54.3
(0.5)
A 		36.7
(-1.3)
A 		79.6
(3)
A 		60.7
(1.1)
A 		19.8
(-3)
A 		60
C 46.6
(-1.2)
A 		78.5
(3)
A 		66.4
(1.4)
A 		61
(0.7)
A 		32.7
(-3)
A 		57.6
(0.3)
A 		46
avr 59.2
(1) 		60
(1.1) 		55.1
(0.2) 		70.1
(3) 		56.1
(0.4) 		37.9
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 22
(3)
A 		2.7
(-3)
A 		20.8
(2.6)
A 		15
(0.8)
P 		19
B 19.1
(2.2)
A 		11.8
(-2.1)
A 		10.3
(-3)
A 		20.4
(3)
A 		10
C 15.8
(-3)
A 		22.4
(1.8)
A 		19.9
(-0)
A 		24
(3)
P 		8
avr 19
(2.4) 		12.3
(-3) 		17
(0.8) 		19.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 11
(-2)
A 		16.8
(0.5)
A 		13.5
(-1)
P 		17.7
(0.9)
A 		22.6
(3)
A 		8.8
(-3)
A 		14
B 24.8
(3)
M 		18.1
(0.7)
A 		8.9
(-2.5)
A 		21.1
(1.7)
A 		24.7
(3)
A 		7.4
(-3)
A 		17
C 17.3
(0)
A 		23.9
(3)
A 		16.9
(-0.2)
A 		12.3
(-2.2)
A 		10.6
(-3)
A 		19.3
(0.9)
A 		13
avr 17.7
(1.5) 		19.6
(3) 		13.1
(-2) 		17
(1) 		19.3
(2.8) 		11.8
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180094_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.498
Sequence Type Exemplar sequence
Representative Public ID T05E8.2 NCBI
Target Description T05E8.2 /REP_DB=WormBase Gene ID /WP=CE13243 /TR=O01597 /GB=AAB52426.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059202
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000033230 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5463455:5469633:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033228 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5463454-5469630(-) 88.26 99.44
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52426 Histone h1 like protein 8 [Caenorhabditis elegans] ref|NP_491603.2| HIstone H1 Like family member (hil-8) [Caenorhabditis elegans] 5.0E-71
blast CAA94675 Hypothetical protein C04G2.10 [Caenorhabditis elegans] ref|NP_501839.1| C04G2.10 [Caenorhabditis elegans] 2.0E-17
blast CAB54446 Hypothetical protein Y48B6A.10 [Caenorhabditis elegans] ref|NP_496965.1| Y48B6A.10 [Caenorhabditis elegans] 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:180094_AT
gaaactcgttgacttgttctgagtctgtggcaattatgcaacaattggttctcacattgg
ccatcgctaaggatcgaatattattaaaccatagagatttatttggtggaaatgtactaa
ttaaagtcactggcaaaacaaacctccattatacgcataatggagtcaagattacactga
tgaggaaggctatgttgtgtatcttgttgattttggacaaagtgcaattggccgtaaaag
ttgtaaaacttccaaaaaacccgaaaactgattacactctcgaattttttttatggaaaa
ctagtattggaatcggattcagcataccaaaaaaccgctgtacctacaattttattctga
ttgctcaaaaattgagagcaaacgagcgaaaagttgaaaaatcgaccgcccaactgctat
gggacaccccgagattttggaaatttttcacgaaaaaggacactgctacttctgatctat
cgtatggactcccgagaattggtgccgaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTCGTTGACTTGTTCTGAGTC 237 357 815 Antisense
GTTCTGAGTCTGTGGCAATTATGCA 218 443 830 Antisense
TTCTCACATTGGCCATCGCTAAGGA 91 693 863 Antisense
GGCAAAACAAACCTCCATTATACGC 428 535 946 Antisense
GGCTATGTTGTGTATCTTGTTGATT 561 537 1002 Antisense
AACTGATTACACTCTCGAATTTTTT 256 141 1080 Antisense
GTTGAAAAATCGACCGCCCAACTGC 700 393 1207 Antisense
AACTGCTATGGGACACCCCGAGATT 206 137 1226 Antisense
AAAGGACACTGCTACTTCTGATCTA 328 121 1269 Antisense
TTCTGATCTATCGTATGGACTCCCG 510 693 1284 Antisense
GACTCCCGAGAATTGGTGCCGAACT 218 373 1301 Antisense
Sequence Source Affymetrix Proprietary Database