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[180093_s_at] 7TM chemoreceptor, srw family /// ---

Description M01G12.4 /REP_DB=WormBase Gene ID /WP=CE18069 /TR=O62311 /GB=CAB04613.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 01      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 2.6
(-3)
A 		5.1
(-1.6)
A 		3.8
(-2.3)
A 		13.4
(3)
A 		11
B 3
(0.6)
A 		0.8
(-3)
A 		4.5
(3)
A 		3.9
(2)
A 		4
C 2.6
(-2.9)
A 		2.6
(-2.9)
A 		1.6
(-3)
A 		60.9
(3)
A 		59
avr 2.7
(-3) 		2.8
(-3) 		3.3
(-2.8) 		26.1
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3.2
(1.5)
A 		0.7
(-3)
A 		1.5
(-1.5)
A 		1.9
(-0.8)
A 		1.5
(-1.5)
A 		4
(3)
A 		3
B 2.8
(3)
A 		1.5
(-1.9)
A 		1.2
(-3)
A 		1.2
(-3)
A 		2.2
(0.8)
A 		1.9
(-0.4)
A 		2
C 1.5
(-2.6)
A 		2.7
(-1.7)
A 		1.4
(-2.7)
A 		9.5
(3)
A 		1.4
(-2.7)
A 		0.9
(-3)
A 		9
avr 2.5
(-0.6) 		1.6
(-2.6) 		1.4
(-3) 		4.2
(3) 		1.7
(-2.4) 		2.3
(-1.1) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.9
(-3)
A 		1.1
(-1.9)
A 		1
(-2.5)
A 		2
(3)
A 		1
B 1
(3)
A 		0.2
(-3)
A 		1
(3)
A 		0.8
(1.5)
A 		1
C 0.9
(-2.8)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		10.3
(3)
A 		10
avr 0.9
(-2.7) 		0.7
(-3) 		0.8
(-2.8) 		4.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.6
(-0.4)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.5
(-1.3)
A 		0.5
(-1.3)
A 		1
(3)
A 		1
B 1
(3)
A 		0.5
(-1.3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.9
(2.1)
A 		0.7
(0.4)
A 		1
C 0.5
(-2.3)
A 		0.8
(-1.1)
A 		0.4
(-2.6)
A 		1.9
(3)
A 		0.5
(-2.3)
A 		0.3
(-3)
A 		2
avr 0.7
(1) 		0.5
(-1) 		0.3
(-3) 		0.9
(3) 		0.6
(-0) 		0.7
(1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180093_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.873
Sequence Type Exemplar sequence
Representative Public ID M01G12.4 NCBI
Target Description M01G12.4 /REP_DB=WormBase Gene ID /WP=CE18069 /TR=O62311 /GB=CAB04613.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060663(11), NM_060661(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060663 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-111) (srw-111) mRNA, complete cds. 11/11 A 
NM_060661 NCBI Caenorhabditis elegans M01G12.6 (M01G12.6) mRNA, complete cds. 11/11 A 
SNAP00000024225 ENSEMBL cdna:SNAP chromosome:CEL140:I:12126119:12128697:-1 11/11 None
SNAP00000024226 ENSEMBL cdna:SNAP chromosome:CEL140:I:12127233:12133708:1 11/11 None
M01G12.6 ENSEMBL cdna:known chromosome:CEL140:I:12126119:12129455:-1 gene:M01G12.6 11/11 A 
M01G12.4 ENSEMBL cdna:known chromosome:CEL140:I:12130933:12133708:1 gene:M01G12.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12130863-12133639(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family

Gene Symbol srw-111
Ensembl M01G12.6
M01G12.4
Entrez Gene 187381 Entrez gene
187383 Entrez gene
SwissProt O62311 EMBL-EBI
O62312 EMBL-EBI
WormBase CE18069 Wormbase
CE18070 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04613 Hypothetical protein M01G12.4 [Caenorhabditis elegans] ref|NP_493064.1| Serpentine Receptor, class W family member (srw-111) [Caenorhabditis elegans] 0.0
blast CAB04615 Hypothetical protein M01G12.6 [Caenorhabditis elegans] ref|NP_493062.1| M01G12.6 [Caenorhabditis elegans] 0.0
blast CAB04615 Hypothetical protein M01G12.6 [Caenorhabditis elegans] ref|NP_493062.1| M01G12.6 [Caenorhabditis elegans] 1.0E-130
blast CAB04613 Hypothetical protein M01G12.4 [Caenorhabditis elegans] ref|NP_493064.1| Serpentine Receptor, class W family member (srw-111) [Caenorhabditis elegans] 2.0E-67
blast CAB04615 Hypothetical protein M01G12.6 [Caenorhabditis elegans] ref|NP_493062.1| M01G12.6 [Caenorhabditis elegans] 6.0E-67
blast CAB04613 Hypothetical protein M01G12.4 [Caenorhabditis elegans] ref|NP_493064.1| Serpentine Receptor, class W family member (srw-111) [Caenorhabditis elegans] 8.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493064.1 7 37-59,71-93,103-122,161-183,216-238,266-288,303-325
NP_493062.1 9 25-42,63-80,95-117,138-160,164-186,212-234,249-271,333-355,370-392
M01G12.6 9 25-42,63-80,95-117,138-160,164-186,212-234,249-271,333-355,370-392
M01G12.4 7 37-59,71-93,103-122,161-183,216-238,266-288,303-325
SNAP00000024225 4 31-53,68-90,175-197,212-234
SNAP00000024226 7 176-198,210-232,242-261,300-322,355-377,405-427,442-464
Sequence
Target Sequence 
>C. ELEGANS:180093_S_AT
ttccctatattcgccgggttacttgttaaagaaatgcacaaagcaactgagaaccaacga
agactaacatcatcaaagaaaactatagattataataaaacaactcgcctggtcttttac
aataccctattcttcttcatttcactgtttcctcttggtgtcagtaggacacttctcctt
ctttcttcaacggaattcttgtggccaatgtttatcgatttggagagcatcgttctagtg
attttcacgctgaacacaatgtccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCTATATTCGCCGGGTTACTTG 14 437 700 Antisense
AAGCAACTGAGAACCAACGAAGACT 455 149 740 Antisense
AACAACTCGCCTGGTCTTTTACAAT 443 135 798 Antisense
GTCTTTTACAATACCCTATTCTTCT 253 449 811 Antisense
CTATTCTTCTTCATTTCACTGTTTC 71 225 826 Antisense
TCACTGTTTCCTCTTGGTGTCAGTA 402 627 841 Antisense
TGTCAGTAGGACACTTCTCCTTCTT 385 559 858 Antisense
TTCTTCAACGGAATTCTTGTGGCCA 446 689 882 Antisense
TCTTGTGGCCAATGTTTATCGATTT 60 615 896 Antisense
AGCATCGTTCTAGTGATTTTCACGC 559 75 925 Antisense
ATTTTCACGCTGAACACAATGTCCC 67 15 940 Antisense
Sequence Source Affymetrix Proprietary Database