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[180092_at] 7TM chemoreceptor, srw family

Description M01G12.4 /REP_DB=WormBase Gene ID /WP=CE18069 /TR=O62311 /GB=CAB04613.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 34      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 5.4
(-2.3)
A 		27.1
(3)
A 		7.8
(-1.7)
A 		2.7
(-3)
A 		24
B 6.7
(-2.7)
A 		33.1
(3)
A 		22
(0.6)
A 		5.4
(-3)
A 		28
C 19.5
(-1.2)
A 		7.4
(-3)
A 		13.1
(-2.1)
A 		47.4
(3)
A 		40
avr 10.5
(-3) 		22.5
(3) 		14.3
(-1.1) 		18.5
(1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 17.4
(0.1)
A 		2
(-3)
A 		30.1
(2.6)
A 		32
(3)
A 		8.4
(-1.7)
A 		31.9
(3)
A 		30
B 5.3
(-2.1)
A 		2.4
(-3)
A 		6.5
(-1.7)
A 		18.5
(2.1)
A 		17.5
(1.8)
A 		21.4
(3)
A 		19
C 18.4
(0.9)
A 		26
(2.7)
A 		1.7
(-3)
A 		10.2
(-1)
A 		27.5
(3)
M 		2.8
(-2.7)
A 		26
avr 13.7
(-0.9) 		10.1
(-3) 		12.8
(-1.4) 		20.2
(3) 		17.8
(1.6) 		18.7
(2.1) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2
(-1.3)
A 		5.9
(3)
A 		2
(-1.3)
A 		0.4
(-3)
A 		6
B 2.1
(-2.2)
A 		8.2
(3)
A 		5.1
(0.4)
A 		1.1
(-3)
A 		7
C 6.5
(1.5)
A 		2.1
(-3)
A 		4.6
(-0.5)
A 		8
(3)
A 		6
avr 3.5
(-2.2) 		5.4
(3) 		3.9
(-1.1) 		3.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3.2
(-1)
A 		0.7
(-3)
A 		6.5
(1.7)
A 		8.1
(3)
A 		2.5
(-1.5)
A 		7.8
(2.8)
A 		7
B 1.9
(-2.1)
A 		0.8
(-3)
A 		1.6
(-2.3)
A 		4.9
(0.4)
A 		7.1
(2.3)
A 		8
(3)
A 		7
C 6.8
(1.5)
A 		7.9
(2.3)
A 		0.4
(-3)
A 		2
(-1.9)
A 		8.9
(3)
M 		0.9
(-2.6)
A 		9
avr 4
(-0.9) 		3.1
(-2.5) 		2.8
(-3) 		5
(0.9) 		6.2
(3) 		5.6
(1.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.873
Sequence Type Exemplar sequence
Representative Public ID M01G12.4 NCBI
Target Description M01G12.4 /REP_DB=WormBase Gene ID /WP=CE18069 /TR=O62311 /GB=CAB04613.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060663(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060663 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-111) (srw-111) mRNA, complete cds. 11/11 A 
SNAP00000024226 ENSEMBL cdna:SNAP chromosome:CEL140:I:12127233:12133708:1 11/11 None
M01G12.4 ENSEMBL cdna:known chromosome:CEL140:I:12130933:12133708:1 gene:M01G12.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12130863-12133639(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-111
Ensembl M01G12.4
Entrez Gene 187381 Entrez gene
SwissProt O62311 EMBL-EBI
WormBase CE18069 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04613 Hypothetical protein M01G12.4 [Caenorhabditis elegans] ref|NP_493064.1| Serpentine Receptor, class W family member (srw-111) [Caenorhabditis elegans] 0.0
blast CAB04615 Hypothetical protein M01G12.6 [Caenorhabditis elegans] ref|NP_493062.1| M01G12.6 [Caenorhabditis elegans] 6.0E-67
blast CAB04615 Hypothetical protein M01G12.6 [Caenorhabditis elegans] ref|NP_493062.1| M01G12.6 [Caenorhabditis elegans] 1.0E-66
blast CAB03508 Hypothetical protein ZK1037.9 [Caenorhabditis elegans] ref|NP_506802.1| Serpentine Receptor, class W family member (srw-113) [Caenorhabditis elegans] 9.0E-66
blast CAB03508 Hypothetical protein ZK1037.9 [Caenorhabditis elegans] ref|NP_506802.1| Serpentine Receptor, class W family member (srw-113) [Caenorhabditis elegans] 1.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493064.1 7 37-59,71-93,103-122,161-183,216-238,266-288,303-325
M01G12.4 7 37-59,71-93,103-122,161-183,216-238,266-288,303-325
SNAP00000024226 7 176-198,210-232,242-261,300-322,355-377,405-427,442-464
Sequence
Target Sequence 
>C. ELEGANS:180092_AT
gttcgcaacccgatggatccgaaatttgaacgcctcacaaaaccttatactgcattattc
gtaattcttggagttcctatttcaagtcttcctttctcgttagcatttcaaattggaata
aggattacaaagcagaaagaatttagtgaatgttatccgaaaggagtgctgacatatata
gttgatcaaaaagtatcagttaagcaactttcttcgaccgtgtcggcaattatttctaat
atcatcccctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCGCAACCCGATGGATCCGAAAT 141 443 442 Antisense
TGGATCCGAAATTTGAACGCCTCAC 128 549 455 Antisense
AACGCCTCACAAAACCTTATACTGC 451 145 470 Antisense
AACCTTATACTGCATTATTCGTAAT 468 145 482 Antisense
TATTCGTAATTCTTGGAGTTCCTAT 401 663 497 Antisense
GGAGTTCCTATTTCAAGTCTTCCTT 3 519 511 Antisense
CTTCCTTTCTCGTTAGCATTTCAAA 636 219 529 Antisense
GGAGTGCTGACATATATAGTTGATC 366 517 604 Antisense
AGTTAAGCAACTTTCTTCGACCGTG 58 63 639 Antisense
CGACCGTGTCGGCAATTATTTCTAA 192 247 656 Antisense
AATTATTTCTAATATCATCCCCTGC 9 177 669 Antisense
Sequence Source Affymetrix Proprietary Database