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[180090_at]

Description T21E3.2 /REP_DB=WormBase Gene ID /WP=CE13876 /TR=O01766 /GB=AAB54137.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 43      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3.2
(-1.7)
A 		4.3
(3)
A 		3.8
(0.9)
A 		2.9
(-3)
A 		1
B 2.5
(1)
A 		2.8
(3)
A 		1.9
(-3)
A 		2.6
(1.7)
A 		1
C 2.8
(-2.7)
A 		9.3
(3)
A 		2.5
(-3)
A 		3
(-2.6)
A 		7
avr 2.8
(-2.8) 		5.5
(3) 		2.7
(-3) 		2.8
(-2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 7.9
(3)
A 		2.1
(-2.7)
A 		1.8
(-3)
A 		3.1
(-1.7)
A 		3.6
(-1.2)
A 		5.1
(0.2)
A 		6
B 2.9
(-1.8)
A 		2.7
(-2.2)
A 		3.1
(-1.3)
A 		3.3
(-0.9)
A 		2.3
(-3)
A 		5.2
(3)
A 		3
C 2
(-3)
A 		2.5
(-2.5)
A 		3.5
(-1.4)
A 		7.2
(2.4)
A 		2.5
(-2.5)
A 		7.8
(3)
A 		6
avr 4.3
(0.2) 		2.4
(-3) 		2.8
(-2.3) 		4.5
(0.5) 		2.8
(-2.3) 		6
(3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.2
(3)
A 		0.9
(0.8)
A 		1
(1.5)
A 		0.4
(-3)
A 		1
B 0.8
(3)
A 		0.7
(1.5)
A 		0.4
(-3)
A 		0.6
(-0)
A 		0
C 0.9
(-1.9)
A 		2.7
(3)
A 		0.9
(-1.9)
A 		0.5
(-3)
A 		2
avr 1
(0.3) 		1.4
(3) 		0.8
(-1) 		0.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.5
(3)
A 		0.7
(-1.4)
A 		0.4
(-3)
A 		0.8
(-0.8)
A 		1.1
(0.8)
A 		1.3
(1.9)
A 		1
B 1
(-1.5)
A 		0.9
(-2)
A 		0.7
(-3)
A 		0.9
(-2)
A 		0.9
(-2)
A 		1.9
(3)
A 		1
C 0.7
(-3)
A 		0.8
(-2.7)
A 		0.9
(-2.4)
A 		1.5
(-0.5)
A 		0.8
(-2.7)
A 		2.6
(3)
A 		2
avr 1.1
(-1) 		0.8
(-2.5) 		0.7
(-3) 		1.1
(-1) 		0.9
(-2) 		1.9
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.187
Sequence Type Exemplar sequence
Representative Public ID T21E3.2 NCBI
Target Description T21E3.2 /REP_DB=WormBase Gene ID /WP=CE13876 /TR=O01766 /GB=AAB54137.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058867
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000021732 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3930832:3931546:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058867 8/11 Cross Hyb Matching Probes None
SNAP00000021726 8/11 Cross Hyb Matching Probes None
T21E3.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3930831-3931546(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54137 Hypothetical protein T21E3.2 [Caenorhabditis elegans] ref|NP_491268.2| T21E3.2 [Caenorhabditis elegans] 3.0E-85
blast CAE66703 Hypothetical protein CBG12048 [Caenorhabditis briggsae] 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:180090_AT
gacaggtattccggcaattttagattcaaaagcgcataaccgtatttcagttatgtttat
ttcgtgctctaaaacgagccaagcttcaaaagtggaggagaaaaagccgaaaacctcttc
aatcactacaaaaaccatcacttcggcagatttggctgacaaaaccgatgtcagcaaaac
ttccactccagtcagcacgaactattcaactgtgtcaaaaacgatttcaatgcaaaaaga
agtcgagaagaaccccaacagcgcagaggacttcaatgttaatcgaaagaaaacttcgaa
atttcaaatttcaaaagaatctgtagcagttgaaatgaaaccagatttcaagaaaaataa
agatgttggcggcaaaaaggaaaaagcaaaatcagcggaaaaaccgaacaagaaagaaat
cactccgccacaaaccatcaagaaaacgtcaatggagaaggctggaaaggaagaagatgt
gaagtgtgatgaggaagtttcaagaaataatatggaaagatctgatcgaactcttcattt
ttcgaagaaaatgattcgtggccccgtgaagcctgaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGGTATTCCGGCAATTTTAGAT 273 369 54 Antisense
CAAAAGCGCATAACCGTATTTCAGT 528 189 80 Antisense
TCAGTTATGTTTATTTCGTGCTCTA 52 619 100 Antisense
ACCTCTTCAATCACTACAAAAACCA 628 87 166 Antisense
AACCATCACTTCGGCAGATTTGGCT 703 147 186 Antisense
ACCGATGTCAGCAAAACTTCCACTC 433 89 217 Antisense
CCACTCCAGTCAGCACGAACTATTC 156 275 236 Antisense
AGAAGTCGAGAAGAACCCCAACAGC 509 67 291 Antisense
CCCCAACAGCGCAGAGGACTTCAAT 655 259 306 Antisense
CAAGAAAGAAATCACTCCGCCACAA 48 185 462 Antisense
TCGTGGCCCCGTGAAGCCTGAAGAA 636 589 609 Antisense
Sequence Source Affymetrix Proprietary Database