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[180088_at]

Description C55C2.3 /REP_DB=WormBase Gene ID /WP=CE09026 /TR=O01828 /GB=AAB54193.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 11.4
(-3)
A 		38.7
(-0.9)
A 		35.2
(-1.2)
A 		88.9
(3)
A 		78
B 37.5
(-2.1)
A 		37.9
(-2.1)
A 		31.4
(-3)
A 		73.2
(3)
A 		42
C 6.5
(-2.9)
A 		42.3
(-1.1)
A 		4
(-3)
A 		125.4
(3)
P 		121
avr 18.5
(-3) 		39.6
(-1.4) 		23.5
(-2.6) 		95.8
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 28.9
(-2.4)
A 		26.8
(-3)
A 		27.7
(-2.7)
A 		30.3
(-2)
A 		43.1
(1.6)
A 		48.2
(3)
A 		21
B 13.7
(-2)
A 		10.1
(-2.5)
A 		5.7
(-3)
A 		17.7
(-1.5)
A 		53.7
(3)
A 		52.7
(2.9)
P 		48
C 1
(-3)
A 		48.6
(1.4)
A 		23.8
(-0.9)
A 		2.7
(-2.8)
A 		31.4
(-0.2)
A 		66.6
(3)
A 		66
avr 14.5
(-3) 		28.5
(-1) 		19.1
(-2.3) 		16.9
(-2.7) 		42.7
(1.1) 		55.8
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 4.1
(-3)
A 		8.4
(-0.1)
A 		9.2
(0.4)
A 		13
(3)
A 		9
B 12
(0.4)
A 		9.4
(-1.5)
A 		7.3
(-3)
A 		15.6
(3)
A 		8
C 2.1
(-2.8)
A 		12.2
(0.3)
A 		1.4
(-3)
A 		21.1
(3)
P 		20
avr 6.1
(-2.9) 		10
(-0.7) 		6
(-3) 		16.6
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 5.3
(-3)
A 		9.5
(0.3)
A 		6
(-2.5)
A 		7.7
(-1.1)
A 		13
(3)
A 		11.7
(2)
A 		8
B 4.8
(-2)
A 		3.3
(-2.4)
A 		1.4
(-3)
A 		4.7
(-2)
A 		21.8
(3)
A 		19.7
(2.4)
P 		20
C 0.4
(-3)
A 		14.8
(0.9)
A 		6.1
(-1.4)
A 		0.5
(-3)
A 		10.2
(-0.3)
A 		22.3
(3)
A 		22
avr 3.5
(-3) 		9.2
(-0.6) 		4.5
(-2.6) 		4.3
(-2.7) 		15
(1.8) 		17.9
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180088_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.162
Sequence Type Exemplar sequence
Representative Public ID C55C2.3 NCBI
Target Description C55C2.3 /REP_DB=WormBase Gene ID /WP=CE09026 /TR=O01828 /GB=AAB54193.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058598(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058598 NCBI Caenorhabditis elegans C55C2.3 (C55C2.3) mRNA, complete cds. 10/11 None
SNAP00000032492 ENSEMBL cdna:SNAP chromosome:CEL140:I:2558358:2561945:1 9/11 None
GENEFINDER00000032498 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2558638:2561945:1 11/11 None
C55C2.3 ENSEMBL cdna:known chromosome:CEL140:I:2560923:2561821:1 gene:C55C2.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2560922-2561945(+) 91.7 100.0
Public Domain and Genome References
Gene Title
Ensembl C55C2.3
Entrez Gene 183849 Entrez gene
SwissProt O01828 EMBL-EBI
WormBase CE36638 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54193 Hypothetical protein C55C2.3 [Caenorhabditis elegans] ref|NP_490999.2| C55C2.3 [Caenorhabditis elegans] 1.0E-103
blast AAB54193 Hypothetical protein C55C2.3 [Caenorhabditis elegans] ref|NP_490999.2| C55C2.3 [Caenorhabditis elegans] 1.0E-102
blast AAB54193 Hypothetical protein C55C2.3 [Caenorhabditis elegans] ref|NP_490999.2| C55C2.3 [Caenorhabditis elegans] 5.0E-86
blast AAB54196 Hypothetical protein C55C2.4 [Caenorhabditis elegans] ref|NP_490998.2| C55C2.4 [Caenorhabditis elegans] 6.0E-86
blast AAB54196 Hypothetical protein C55C2.4 [Caenorhabditis elegans] ref|NP_490998.2| C55C2.4 [Caenorhabditis elegans] 2.0E-59
blast CAE60535 Hypothetical protein CBG04162 [Caenorhabditis briggsae] 1.0E-23
blast AAF60461 Hypothetical protein Y23H5B.1 [Caenorhabditis elegans] ref|NP_490997.1| Y23H5B.1 [Caenorhabditis elegans] 2.0E-21
blast CAE60535 Hypothetical protein CBG04162 [Caenorhabditis briggsae] 1.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490999.2 2 123-145,172-194
C55C2.3 2 123-145,172-194
GENEFINDER00000032498 4 132-154,181-203,408-430,457-479
Sequence
Target Sequence 
>C. ELEGANS:180088_AT
gagttatgtgccacttgtgttgaataattggacacctccgtcagttccagaaagaaatta
tacatgggatatgaatcaagagtctccatatactattcactttcacttggcgagacaact
agaagaaaaatatatgaacaaatttaaaaaatataaaaaattggcactgaataaaaataa
ttcggaaagggaatctggttatacctacgaccaattggctaatagatgccgcatactgat
cgcacttatggtagttcaagtgacctttgctgtccttagaagtgcataccatttccatta
ttattatattgatcgatatgtatttggagaagacattgaagaggatgaattgggtgaagc
gataagacgaatagatgatggatataatttgatgtattgttttttcgctattttaattat
tttgttgtgtctggcatcggaatatgttaagtggatttacggttttgatgctaagtatgc
gactcaatatgttttctcctttgatggtataaactttaaagctggacttacagataaaga
agcggtgtacggcaattgtcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTATGTGCCACTTGTGTTGAAT 575 397 147 Antisense
AATAATTGGACACCTCCGTCAGTTC 662 167 169 Antisense
GAGTCTCCATATACTATTCACTTTC 235 401 226 Antisense
TATTCACTTTCACTTGGCGAGACAA 262 663 240 Antisense
GTTATACCTACGACCAATTGGCTAA 454 447 344 Antisense
AGATGCCGCATACTGATCGCACTTA 536 67 370 Antisense
GTTCAAGTGACCTTTGCTGTCCTTA 256 445 400 Antisense
AAGTGCATACCATTTCCATTATTAT 398 157 426 Antisense
TATTTTGTTGTGTCTGGCATCGGAA 270 663 564 Antisense
ATGCGACTCAATATGTTTTCTCCTT 592 41 623 Antisense
GAAGCGGTGTACGGCAATTGTCAAC 702 341 685 Antisense
Sequence Source Affymetrix Proprietary Database